Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1001 ATGGCTCTCTATCTCGGTCTTCTCTTCTTCCTTGTTTCTTCCGCTGCTGCTGCTTGTGATCGTTGCGTTCATCAATCCAAAGCTGCTTATTACTATGATGATTCACCTATTCAACGTGGGGCATGTGGGTATGGCCCATTGGCATTTGAATTATCTAATGGGTATGTCGGTGGTGTTGTGCCTTCCCTTTATAAACAAGGAGCTGGATGTGGTGGTTGTTTCCTGGTAAGGTGCAAGAACAAAAGACTTTGCAACAATGCTGGTACTAAAGTGATTGTGACAGATCAAAACTACGATAACAGATATGACTTTGTCCTCAGTAAGAAAGCCTACACTAAAATGGCTTTGAAGAATAAGGCTACAGAACTTTTGAAGCTAGGAACAGTTGATGTGGAATACAAGAGGATACCTTGTTTGTATGGAAATAGGACTTTGTTAGCGCGAGTGGAGGAATGGAGCCAGAAGCCATACTACTTGGCCATTAAATTCCTATACCAAGGTGGTCAGACAGAAATCAAAAGAGTTGAAATAGCTGAGGCTGGTTCAACAGAATGGGAACCCATGAAGAGAAACTACGGTGCTATTTGGGATACGAACAAACTACTCGAAGGGGCCTTGCAATTGAAGATAGTCATAGCTTATGGGTACAAGAATGAGAAAACATATTTGGCAACTTACGATCTCCCTGCTGATTGGCAAAATGGAGAGATCTATGATACTGGAATTGAAATTCAATTCAATGACATTTCCCAAGAAATTTGCCCACAAAACAAGTGTGCTGATTTGCCATGGGATTGA 798 41.6 MALYLGLLFFLVSSAAAACDRCVHQSKAAYYYDDSPIQRGACGYGPLAFELSNGYVGGVVPSLYKQGAGCGGCFLVRCKNKRLCNNAGTKVIVTDQNYDNRYDFVLSKKAYTKMALKNKATELLKLGTVDVEYKRIPCLYGNRTLLARVEEWSQKPYYLAIKFLYQGGQTEIKRVEIAEAGSTEWEPMKRNYGAIWDTNKLLEGALQLKIVIAYGYKNEKTYLATYDLPADWQNGEIYDTGIEIQFNDISQEICPQNKCADLPWD 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24788030 24789309 - Lag0001121.1 Lac4g1001 604533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1001 265 SUPERFAMILY Barwin-like endoglucanases 8 140 IPR036908 -
Lac4g1001 265 Gene3D - 141 245 IPR036749 -
Lac4g1001 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lac4g1001 265 Pfam Lytic transglycolase 61 133 IPR009009 -
Lac4g1001 265 Gene3D - 12 138 IPR036908 -
Lac4g1001 265 SUPERFAMILY PHL pollen allergen 148 239 IPR036749 -
Lac4g1001 265 CDD DPBB_EXLA_N 14 140 - -
Lac4g1001 265 PANTHER EXPANSIN-B3 8 244 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1001 265 Pfam Expansin C-terminal domain 154 215 IPR007117 -
Lac4g1001 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
Lac4g1001 265 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lac4g1001 265 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lac4g1001 265 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lac4g1001 265 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Lac4g1001 265 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1001 Lac-Chr4:24788030 Lac4g1177 Lac-Chr4:28958212 3.10E-102 dispersed
Lac4g1001 Lac-Chr4:24788030 Lac4g1176 Lac-Chr4:28918575 1.30E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1001 - - - 0.0