Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1153 ATGCCTTTCTTCCTCCCTCTCCTCTTCCTCTCTCTCATCTCTTCCGCCACCGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGGCTGCCGGTTCATACAGAGGCGCCTGTGGCTATGGCGATCTGACATTGGAGCTCTCAAATGGCTACTTCTCCGCCATCATGCCTCCTCTTTACAAGTACGGCGCTGGCTGTGGTGCCTGTTTTCAAGTGAGGTGCAAGAATGAGAAGATTTGCAGCAGAGAAGGGACCAAAATTGTTGTGACAGATCGAAATGACAACACTTATACGGGATTGGTTCTTAGCCAGAAGGGTTTTGCTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTTCTGAGCTATGGGGTTGTGGACGTGGAATTCAAAAGGATTCCTTGTGAGTACAAGAATAGGAACTTGTTGGTTAGAGTAGAAGAGTGGAGTCAATATCCCACTTATTTAGCCATTAAATTGCTTTACCAAGGTGGCCAAACCGAAATTGTAGCGGTCGATATAGCTCAGGTGGGTTATTCGAATTGGGATTATATGGGTAGGAACTATGGAGCTGTGTGGGAGACTAAAAAGCCACTACCGAAAGGACCATTGCAGTTGAGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGCGCTCCCTGCTGATTGGAGACCTGGATTGATCTACGACACGGGAGTTCAAATCTACGACATTGCCAAAGAAGGGTGTCCAACAGAACAATGTGGCGATGGACAATGGAGAAAACGATAA 801 47.19 MPFFLPLLFLSLISSATACDRCVHQAKAAFYQDEAAGSYRGACGYGDLTLELSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSREGTKIVVTDRNDNTYTGLVLSQKGFAEMAVSGKDGLLLSYGVVDVEFKRIPCEYKNRNLLVRVEEWSQYPTYLAIKLLYQGGQTEIVAVDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYALPADWRPGLIYDTGVQIYDIAKEGCPTEQCGDGQWRKR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28377501 28378740 - Lag0001273.1 Lac4g1153 604685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1153 266 Gene3D - 141 246 IPR036749 -
Lac4g1153 266 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1153 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac4g1153 266 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g1153 266 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lac4g1153 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lac4g1153 266 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Lac4g1153 266 Pfam Lytic transglycolase 59 133 IPR009009 -
Lac4g1153 266 Pfam Expansin C-terminal domain 149 230 IPR007117 -
Lac4g1153 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lac4g1153 266 Gene3D - 11 140 IPR036908 -
Lac4g1153 266 PANTHER EXPANSIN-B3 9 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1153 266 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lac4g1153 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1153 Lac-Chr4:28377501 Lac4g1162 Lac-Chr4:28477543 5.70E-104 dispersed
Lac4g1153 Lac-Chr4:28377501 Lac4g1154 Lac-Chr4:28417256 8.00E-90 tandem
Lac11g2337 Lac-Chr11:39417728 Lac4g1153 Lac-Chr4:28377501 5.00E-49 transposed
Lac3g1504 Lac-Chr3:13843685 Lac4g1153 Lac-Chr4:28377501 1.40E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1153 - - - 0.0