Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g1154 | ATGTGTGTTTTTTATCCATTTAAAACAGATGGGGGAGCATGTGGTTATGGTAACATAGCATTGCAGTTTTCCAATGGCTTCTTTGCAGCTGCTGTACCTTCCCTTTATAGACAGGGAGCTGGTTGTGGCGCTTGCTATCAGGTGAGATGCAAAAATAGAAGGCTTTGTACCACAACAGGGACTAAAGTGGTGTTGACAGATCAAAATAATGATAACGTGACAGATATTGTTCTTAGTAAAAGAGCTTTCTATACAATGGCTCTAAAAGGCAAAGGTTCAGACCTGTTGAATCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGCCTTGTGAATACAAAAATAAAAATTTGTTGGTGCAAGTGGAAGAATCAAGTTACAATCCATTCTACTTGGCTATTAAATTTTTGTATCAAGGTGGCCAAACAGATATAGTAGCTGTCGACATAGCTCAAGTTGGTACATCTGATTGGAGCTATATGAAGAGAAGTTATGGTGCTATTTGGGAAATTAACAACATACCTGAAGGAGCACTACAATTGAGGATGGTGGTAACATCAGGATATGATGGGAAGTGGGTTTGGGCAAAATCTGTACTTCCTGCTGATTGGAAAAGTGGAGCAATTTATGACACTGGAGTTCAAATTAATGATATTTCTAAAGAGAGTTGTCCTCCATGGCAATGTGGTGATAAGCAATGGAAATGA | 705 | 38.87 | MCVFYPFKTDGGACGYGNIALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCTTTGTKVVLTDQNNDNVTDIVLSKRAFYTMALKGKGSDLLNLGVVDVEYKRVPCEYKNKNLLVQVEESSYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSYMKRSYGAIWEINNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQINDISKESCPPWQCGDKQWK | 234 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28417256 | 28418148 | - | Lag0001274.1 | Lac4g1154 | 604686 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g1154 | 234 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 129 | 211 | IPR007117 | - | |
| Lac4g1154 | 234 | Pfam | Expansin C-terminal domain | 119 | 200 | IPR007117 | - | |
| Lac4g1154 | 234 | Gene3D | - | 4 | 111 | IPR036908 | - | |
| Lac4g1154 | 234 | PRINTS | Expansin/Lol pI family signature | 98 | 114 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Expansin/Lol pI family signature | 197 | 211 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Expansin/Lol pI family signature | 157 | 171 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Expansin/Lol pI family signature | 32 | 50 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Expansin/Lol pI family signature | 10 | 28 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1154 | 234 | Pfam | Lytic transglycolase | 30 | 105 | IPR009009 | - | |
| Lac4g1154 | 234 | PRINTS | Major pollen allergen Lol pI signature | 136 | 151 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Major pollen allergen Lol pI signature | 87 | 102 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Major pollen allergen Lol pI signature | 187 | 204 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Lac4g1154 | 234 | PRINTS | Major pollen allergen Lol pI signature | 120 | 135 | IPR005795 | GO:0005576(InterPro)|GO:0019953(InterPro) | |
| Lac4g1154 | 234 | SUPERFAMILY | PHL pollen allergen | 115 | 210 | IPR036749 | - | |
| Lac4g1154 | 234 | SUPERFAMILY | Barwin-like endoglucanases | 8 | 114 | IPR036908 | - | |
| Lac4g1154 | 234 | Gene3D | - | 112 | 216 | IPR036749 | - | |
| Lac4g1154 | 234 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 11 | 115 | IPR007112 | - | |
| Lac4g1154 | 234 | PANTHER | EXPANSIN-B3 | 10 | 217 | - | GO:0009505(PANTHER)|GO:0009506(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g1154 | Lac-Chr4:28417256 | Lac4g1162 | Lac-Chr4:28477543 | 2.00E-121 | dispersed | |
| Lac4g1153 | Lac-Chr4:28377501 | Lac4g1154 | Lac-Chr4:28417256 | 8.00E-90 | tandem |
Pathway information