Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1158 ATGGTTTGGTTTTTGGGCTTCCTCCTCTTTTTCTTGGTCTCTTCGGCCAATGCTTGTGATCGTTGTATTTTTCAATCGAAGGTTGCTCACTATTACGGGGATGCGCCTACTACATATGGAGGTGCATGTGGGTATGGAAATATGGCCTTGGAATTATCCCAAGGTTATTTTGCAGCAGCTGTGCCTTCTATCTACCGCAAAGGGATGGGTTGTGGTGCCTGCTATCAAATACGATGCAAGAATGAAACATTGTGTAACACAGTAGGGACCAAAGTAGTTTTAACAGATGAAAATGCTGATAACAGAACAGATTTTGTTATCAGTAAAAAAGCCTTTTCTGCTATGGCTTTAAAGGACAAAGGCCAAGAACTTTTGAAAACTGGAATCGTTGATATGGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAGTTCAAGTGGTAGAATGGAGCCACAAACCATATTACTTGGCTATTAAATTTCTCTACCAAGGAGGCCAAACCGACATAACAGCTGTCTACATAGCAGCTCAGGATGGTTCGGGTGACGGGCGCTACATGAAAAGAAATTATGGACCCATTTGGGATACCAATAATGTGCCTGAAGGAGCAATTAAGCTTGTGGCAGTGGTAGTTTCGGGATACAATAATGGGAGGGGGATTGTGATAAATTATGCACTCCCTGTTGATTGGAAGAATGGAGAGATTTATGATACTGGAATTCAGATTAAGGATATCGCTTCTGAATATTGCAATCCTTGGCGATGCGGTGAACAACCATGGAAATGA 795 41.01 MVWFLGFLLFFLVSSANACDRCIFQSKVAHYYGDAPTTYGGACGYGNMALELSQGYFAAAVPSIYRKGMGCGACYQIRCKNETLCNTVGTKVVLTDENADNRTDFVISKKAFSAMALKDKGQELLKTGIVDMEYKRIPCEYNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDITAVYIAAQDGSGDGRYMKRNYGPIWDTNNVPEGAIKLVAVVVSGYNNGRGIVINYALPVDWKNGEIYDTGIQIKDIASEYCNPWRCGEQPWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28439785 28441005 - Lag0001278.1 Lac4g1158 604690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1158 264 Gene3D - 13 140 IPR036908 -
Lac4g1158 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 241 IPR007117 -
Lac4g1158 264 PANTHER EXPANSIN-B3 9 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1158 264 Gene3D - 141 246 IPR036749 -
Lac4g1158 264 SUPERFAMILY PHL pollen allergen 150 240 IPR036749 -
Lac4g1158 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lac4g1158 264 SUPERFAMILY Barwin-like endoglucanases 9 143 IPR036908 -
Lac4g1158 264 CDD DPBB_EXLA_N 14 141 - -
Lac4g1158 264 Pfam Expansin C-terminal domain 154 213 IPR007117 -
Lac4g1158 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lac4g1158 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1158 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g1158 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lac4g1158 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac4g1158 264 Pfam Lytic transglycolase 59 133 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1158 Lac-Chr4:28439785 Lac4g1169 Lac-Chr4:28590697 9.30E-107 dispersed
Lac4g1158 Lac-Chr4:28439785 Lac4g1161 Lac-Chr4:28473167 8.90E-134 proximal
Lac4g0594 Lac-Chr4:13865005 Lac4g1158 Lac-Chr4:28439785 7.10E-14 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1158 - - - 0.0