Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1161 ATGGCTTGGTTCTTTGCCTTTCTCCTCTTCTTCTTTATCTCTTCTGCTAATGCCTGTGATCGTTGTATTTTTCAATCGAAGGCTGCTCACTACTATGAGGATTCACCTACTTCATATGGAGGCGCATGTGGGTATGGAAACTTGGCCTTGGAAATGTCCCAAGGTTATTTTGCAGCTGCTGTTCCTTCTATTTATCGAGAAGGAGTAGGGTGTGGTGCTTGCTATCAGATAAGATGCAAGAATGCAACTTTATGTAACATGGTAGGGACCAAAGTAGTTGTGACAGATAAAAATGCTGATAATAGAACAAATTTTCTTCTCAGTAAAAAAGCTTTTTCTGCTATGGCTTTAATGGGTAAAGGTCAAGAACTTTTGAAAACTGGAATTGTTGACGTGGAATACAAGAGGATACCTTGTGAATACAATAAAAATTTATTAATACAAGTGGTAGAATGGAGCCACAAGCCATATTATTTGGCTATTAAATTCTTGTACCAAGGAGGCCAAACCGACATAACAAGGGTCTACATAACAGCTCAGGATGGTTCTGGTGGCGGGCACTACATGAAAAGAAACTATGGACCTATTTGGGATACCAATAATGTACCTGCAGGGGCCATTAAGCTAGTGGCATCGGTAATTTCAGGATTATATGATGGAAAAGGGCCAATCATAATACATCATGCACTTCCTATTGATTGGAAAAATGGAGAGATTTATGATACTGGAATTAAAATCAGGGATATCGCTTTTGAATATTGCAATCCTCAGCAATGTGGTGAACAACCGTGGAATTGA 798 39.1 MAWFFAFLLFFFISSANACDRCIFQSKAAHYYEDSPTSYGGACGYGNLALEMSQGYFAAAVPSIYREGVGCGACYQIRCKNATLCNMVGTKVVVTDKNADNRTNFLLSKKAFSAMALMGKGQELLKTGIVDVEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITRVYITAQDGSGGGHYMKRNYGPIWDTNNVPAGAIKLVASVISGLYDGKGPIIIHHALPIDWKNGEIYDTGIKIRDIAFEYCNPQQCGEQPWN 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28473167 28474341 - Lag0001281.1 Lac4g1161 604693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1161 265 Gene3D - 141 246 IPR036749 -
Lac4g1161 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lac4g1161 265 Pfam Lytic transglycolase 59 134 IPR009009 -
Lac4g1161 265 Pfam Expansin C-terminal domain 154 205 IPR007117 -
Lac4g1161 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g1161 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac4g1161 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lac4g1161 265 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576(InterPro)
Lac4g1161 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1161 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Lac4g1161 265 CDD DPBB_EXLA_N 14 141 - -
Lac4g1161 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 242 IPR007117 -
Lac4g1161 265 Gene3D - 13 140 IPR036908 -
Lac4g1161 265 PANTHER EXPANSIN-B3 7 248 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1161 265 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1161 Lac-Chr4:28473167 Lac4g1169 Lac-Chr4:28590697 3.80E-100 dispersed
Lac4g1158 Lac-Chr4:28439785 Lac4g1161 Lac-Chr4:28473167 8.90E-134 proximal
Lac4g1161 Lac-Chr4:28473167 Lac4g1162 Lac-Chr4:28477543 5.00E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1161 - - - 0.0