Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1162 ATGGCTTTGTTTGTTGGTTATCTTTTTCTCCTCCTCCTCTCATCTGCCACGGCTTGTGATCGTTGTCTTCACCAATCTAAAGCTAGCCATTATTACGACACACCTACTTCATATGGAGGAGCATGTGGTTATGGTAACTTGGCATTGGAATTCTCTAATGGCTTCTTTGCTGCTGGTGTACCTTCTCTGTATAAACAAGGGGCTGGTTGTGGAGCTTGCTACCAAGTAAGGTGTAAAAATAGAAGGCTATGCAACACTGTGGGAACTAAAGTGGTGTTAACAGATCAAAATAACGATAATGTAACAGACCTCGTTCTTAGTAAAAAGGCTTTCTTCACGATGGCTCTCAATGGCAAAGGTGGGGACTTGTTGAATCTTGGAGTTATTGATGTAGAATACAAGAGGGTGCCTTGTGACTACAAAAATAGAAATTTGTTAGTGCGGGTGGAAGAATCAAGTTATAATCCATTCTACTTAGCTGTTAAATTCTTATACCAAGGTGGCCAAACAGATATGGTAGCTGTCGACATAGCTCAAGCTGGCACCTCTAATTGGAGTCATATGAAAAGAAACTATGGAGCTGTTTGGGAAACTAACGACATACCTGAAGGAGCACTACAATTGAGGATGGTTGTGACTTCAGGATATGATGGAAAGTGGGTTTGGGCAAAATCTGTGCTTCCTGCTGATTGGAAAACTGGAGCAATTTATGACACTGGAGTTCAAATCAACGATATTGCTAAAGAGAGTTGTCCTCCTTGGCAATGCGGTGACGTACAATGGAAATGA 789 41.57 MALFVGYLFLLLLSSATACDRCLHQSKASHYYDTPTSYGGACGYGNLALEFSNGFFAAGVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSKKAFFTMALNGKGGDLLNLGVIDVEYKRVPCDYKNRNLLVRVEESSYNPFYLAVKFLYQGGQTDMVAVDIAQAGTSNWSHMKRNYGAVWETNDIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKTGAIYDTGVQINDIAKESCPPWQCGDVQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28477543 28478612 - Lag0001282.1 Lac4g1162 604694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1162 262 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1162 262 PRINTS Major pollen allergen Lol pI signature 215 232 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1162 262 PRINTS Major pollen allergen Lol pI signature 58 69 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1162 262 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1162 262 PRINTS Major pollen allergen Lol pI signature 148 163 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1162 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lac4g1162 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lac4g1162 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lac4g1162 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lac4g1162 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lac4g1162 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lac4g1162 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Lac4g1162 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lac4g1162 262 Pfam Lytic transglycolase 57 133 IPR009009 -
Lac4g1162 262 CDD DPBB_EXLA_N 14 140 - -
Lac4g1162 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Lac4g1162 262 Gene3D - 13 139 IPR036908 -
Lac4g1162 262 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Lac4g1162 262 Gene3D - 140 244 IPR036749 -
Lac4g1162 262 PANTHER EXPANSIN-B3 9 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1153 Lac-Chr4:28377501 Lac4g1162 Lac-Chr4:28477543 5.70E-104 dispersed
Lac4g1154 Lac-Chr4:28417256 Lac4g1162 Lac-Chr4:28477543 2.00E-121 dispersed
Lac4g1162 Lac-Chr4:28477543 Lac4g1170 Lac-Chr4:28616948 8.60E-137 dispersed
Lac4g1161 Lac-Chr4:28473167 Lac4g1162 Lac-Chr4:28477543 5.00E-92 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1162 - - - 0.0