Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1165 ATGACTTGGTTTCTTAGCTTGCTCTTCTTCTTTCTCGTTTCTTCTACCACGGCTTGTGATCGTTGTATTCATCAATCCAAAGCTACTCATTATTATGGCGATAACCCCACTTCATATGGAGGAGCATGTGGTTATGGAAACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAAAATGGAGCCGGTTGTGGTGCATGTTTTCAAGTAAGATGTAAAGACAAAAGATTATGCAATACATATGGAGCTAAAGTAGTATTGACAGACCAAAATTATGATACTAGAGCAGATTTTGTTCTCAGCAGAAAAGCTTTTTCCGCCATGGCTTTAAAGGGAAAAGGACAAGACCTTTTGAATTCAGGGATTGTAGATATCGAATATAAGAGGATACCTTGTGTATACAAAAACAGAAATTTGGCCGTACGAGTTGAAGAATCAAGTTATAATCCCAACTATTTAGCCATTAAACTTTTATACCAAGGTGGCCAAACCGAGGTAGTGGCTCTTGAAATAGCTGAGGTTGATTCGTCCGATTGGGTGAGTTTAAAGAGAAACTATGGAGCTGTTTGGGATACTAATAAAGTACCAATAGGCGCAATACAAATGAGAATGATAATAACTTCAGGATACGATGGAAAATGGGTGTGGGCAAAATATGTGCTTCCTGCTGACTGGAAAACTGGAGTGATTTACGATATGGGAGTTCAAATGGATGATATTGCAAAAGAGAGTTGTCCTGCATCACAGTGCGGTGATTTACCATGGAAATGA 792 39.14 MTWFLSLLFFFLVSSTTACDRCIHQSKATHYYGDNPTSYGGACGYGNLALEFTNGYFSAAVPSLYKNGAGCGACFQVRCKDKRLCNTYGAKVVLTDQNYDTRADFVLSRKAFSAMALKGKGQDLLNSGIVDIEYKRIPCVYKNRNLAVRVEESSYNPNYLAIKLLYQGGQTEVVALEIAEVDSSDWVSLKRNYGAVWDTNKVPIGAIQMRMIITSGYDGKWVWAKYVLPADWKTGVIYDMGVQMDDIAKESCPASQCGDLPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28493722 28494917 + Lag0001285.1 Lac4g1165 604697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1165 263 Gene3D - 141 244 IPR036749 -
Lac4g1165 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lac4g1165 263 Gene3D - 12 139 IPR036908 -
Lac4g1165 263 CDD DPBB_EXLA_N 17 141 - -
Lac4g1165 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Lac4g1165 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lac4g1165 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Lac4g1165 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lac4g1165 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac4g1165 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g1165 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1165 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Lac4g1165 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1165 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1165 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1165 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Lac4g1165 263 PANTHER EXPANSIN-B3 8 246 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1165 263 Pfam Lytic transglycolase 59 134 IPR009009 -
Lac4g1165 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1165 Lac-Chr4:28493722 Lac4g1170 Lac-Chr4:28616948 8.70E-113 dispersed
Lac4g1165 Lac-Chr4:28493722 Lac4g1167 Lac-Chr4:28534003 9.90E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1165 - - - 0.0