Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g1169 | ATGTCTGGGTTTCTCACCTTTCTCCTCTTCTTACTTGTCTCTTCAACCACTGCTTCGTTTCCTCCGTGTAATCGTTGTGTTCGTCAATCCAAAGCTGCTCATTACTACGAAGATTCACCGATTTCATATGGTGGTGCTTGTGGTTATGGAAATTTGGCATTGGAAATATCCCAAGGGTACTTTGCAGCTGCTACATCTTCCCTTTATAGAGGAGGAGTAGGTTGTGGTGCTTGCTATCAGGTAAGATGCAAGGACAAACGTCTGTGCAATACAGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAAAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCGATGGCTTTAAAAGGAAAAGGCCAACAACTTCTAAATATCGGACTTGTTGACGTAGAATACAAGAGGATACCTTGTGAATACAAAAATAAAAATCTGTTGGTGCAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCCATCAAATTCCTATACCAAGGAGGTCAAACCGATATACAAGCAGTTAACATAGCTCAGGTTGGTTTTCCAAAATGGCGTCCCATGAAAAGAAATTATGGAGCTATATGGGATATCAATTCTGTGCCTGAAGGAGCTTTACAATTGAGAATGGTAGTAACTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTCTGTGCTCCCTACTGATTGGAAAATTGGAGAAATTTACGATACTGGAGTTCAAATCAACGATATTGCTCTAGAGTATTGCTCTCCTGGGCAATGCGGTGATGGACAATGGAAATAG | 807 | 39.78 | MSGFLTFLLFLLVSSTTASFPPCNRCVRQSKAAHYYEDSPISYGGACGYGNLALEISQGYFAAATSSLYRGGVGCGACYQVRCKDKRLCNTAGTKIVLTDQNNDNKTDIVLSKKAFSAMALKGKGQQLLNIGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQAVNIAQVGFPKWRPMKRNYGAIWDINSVPEGALQLRMVVTSRYDNGKWIWAGSVLPTDWKIGEIYDTGVQINDIALEYCSPGQCGDGQWK | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 28590697 | 28591908 | + | Lag0001289.1 | Lac4g1169 | 604701 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g1169 | 268 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 44 | 148 | IPR007112 | - | |
| Lac4g1169 | 268 | SUPERFAMILY | Barwin-like endoglucanases | 19 | 147 | IPR036908 | - | |
| Lac4g1169 | 268 | CDD | DPBB_EXLA_N | 23 | 145 | - | - | |
| Lac4g1169 | 268 | SUPERFAMILY | PHL pollen allergen | 155 | 244 | IPR036749 | - | |
| Lac4g1169 | 268 | Pfam | Lytic transglycolase | 63 | 136 | IPR009009 | - | |
| Lac4g1169 | 268 | PANTHER | EXPANSIN-B3 | 8 | 251 | - | GO:0009505(PANTHER)|GO:0009506(PANTHER) | |
| Lac4g1169 | 268 | Gene3D | - | 15 | 144 | IPR036908 | - | |
| Lac4g1169 | 268 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 162 | 245 | IPR007117 | - | |
| Lac4g1169 | 268 | Gene3D | - | 145 | 250 | IPR036749 | - | |
| Lac4g1169 | 268 | PRINTS | Expansin/Lol pI family signature | 190 | 204 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1169 | 268 | PRINTS | Expansin/Lol pI family signature | 231 | 245 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1169 | 268 | PRINTS | Expansin/Lol pI family signature | 131 | 147 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1169 | 268 | PRINTS | Expansin/Lol pI family signature | 43 | 61 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1169 | 268 | PRINTS | Expansin/Lol pI family signature | 65 | 83 | IPR007118 | GO:0005576(InterPro) | |
| Lac4g1169 | 268 | Pfam | Expansin C-terminal domain | 159 | 234 | IPR007117 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac3g1505 | Lac-Chr3:13876174 | Lac4g1169 | Lac-Chr4:28590697 | 7.60E-101 | dispersed | |
| Lac3g1506 | Lac-Chr3:13903372 | Lac4g1169 | Lac-Chr4:28590697 | 1.40E-107 | dispersed | |
| Lac4g1158 | Lac-Chr4:28439785 | Lac4g1169 | Lac-Chr4:28590697 | 9.30E-107 | dispersed | |
| Lac4g1161 | Lac-Chr4:28473167 | Lac4g1169 | Lac-Chr4:28590697 | 3.80E-100 | dispersed | |
| Lac4g1169 | Lac-Chr4:28590697 | Lac4g1177 | Lac-Chr4:28958212 | 7.30E-99 | dispersed | |
| Lac4g1167 | Lac-Chr4:28534003 | Lac4g1169 | Lac-Chr4:28590697 | 2.90E-15 | proximal | |
| Lac4g1169 | Lac-Chr4:28590697 | Lac4g1170 | Lac-Chr4:28616948 | 4.20E-107 | tandem |
Pathway information