Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1170 ATGGCTTGGTTTCTCGGCTTTCTCTTTCTCTTTTTCATCTCTTCTACTAGTGCTTGTGATCGATGTGTTTATCAATCTAAAGCTAGTCATCTTTATGAATCCCCTACTACATATGGGGGAGCATGTGGTTATGGCAACTTAGCATTGCAGTTCTCTAATGGCTTCTTTGCTGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTCTGCAACACAGTAGGGACTAAGGTAGTGTTGACAGATCAAAATAATGACAACGTCACGGACCTTGTCCTTAGTCAAAGAGCTTTCTTTACCATGGCTCTCAACGGAAAAGGTGCTGATCTTTTGAACCTTGGAGTTGTTGATGTTGAATACAAGAGGGTGCCTTGTCAATATCCTAGTAGAAATTTGTTAGTGCGAGTGGAAGAATCAAGTTACAATCCATTCAAATTGGCAATTAAATTTTTCTATCAAGGTGGCCAAACAGATATTGTTGCTGTCGATATAGCTCAAGTTGGAACTTCCGAGTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGACACAGACAACGTACCTGAAGGCGCATTACAATTGAGAATGGTGGTAACTTCAGGATATGATGGCAAATGGGTTTGGGCAAAGTCTGTGCTTCCTGCTAATTGGGGAGTTGGGGCGATCTATGACACTGGAGTTCAAATCAACGATATTGCCAAAGAAAGTTGCCCTCCGTGGCAATGTGGTGACGCACAATGGAAATAA 789 42.33 MAWFLGFLFLFFISSTSACDRCVYQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSQRAFFTMALNGKGADLLNLGVVDVEYKRVPCQYPSRNLLVRVEESSYNPFKLAIKFFYQGGQTDIVAVDIAQVGTSEWSHMKRSYGAVWDTDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIYDTGVQINDIAKESCPPWQCGDAQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28616948 28618018 + Lag0001290.1 Lac4g1170 604702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1170 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Lac4g1170 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Lac4g1170 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Lac4g1170 262 PANTHER EXPANSIN-B3 9 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1170 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Lac4g1170 262 SUPERFAMILY Barwin-like endoglucanases 10 141 IPR036908 -
Lac4g1170 262 Gene3D - 141 244 IPR036749 -
Lac4g1170 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Lac4g1170 262 CDD DPBB_EXLA_N 14 140 - -
Lac4g1170 262 Gene3D - 13 139 IPR036908 -
Lac4g1170 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Lac4g1170 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lac4g1170 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lac4g1170 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Lac4g1170 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2337 Lac-Chr11:39417728 Lac4g1170 Lac-Chr4:28616948 1.20E-47 dispersed
Lac4g1162 Lac-Chr4:28477543 Lac4g1170 Lac-Chr4:28616948 8.60E-137 dispersed
Lac4g1165 Lac-Chr4:28493722 Lac4g1170 Lac-Chr4:28616948 8.70E-113 dispersed
Lac4g1167 Lac-Chr4:28534003 Lac4g1170 Lac-Chr4:28616948 1.20E-21 dispersed
Lac4g1170 Lac-Chr4:28616948 Lac4g1177 Lac-Chr4:28958212 2.20E-92 dispersed
Lac4g1169 Lac-Chr4:28590697 Lac4g1170 Lac-Chr4:28616948 4.20E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1170 - - - 0.0