Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1176 ATGGCTCTCTATCTTGGTCTTTTCTTGTTTCTTGTTTCTTCTGCCGCTGCTTGTGATCGTTGTGTTCATCAATCCAAAGCTGCTTATTACTATGATGATACTCCCATCCAACATGGGGCATGTGGATATGGCCCTTTGGCATTTGAATTATCCAATGGATATGTTGCTGGTATTGTGCCTTCCCTTTATAAAGAGGGGGCTGGATGTGGTGCTTGTTTCCAGGTGAGATGCAAGGACAAAAGATTTTGCACTACTACTGGAACTAAAGTGGTTGCAACAGATCAAAATTATGATAACAGATATGACTTTGTCCTTAGTAGGAAAGCATACTCAGCAATGGCTTTAAAAAATAAGGCTAAAGAACTTTTGAATCTGGGAACAGTTGATATCGAGTACAAGAGGATACCTTGTACCTACCCAAATAAGAATTTGTTAGTGCGAGTGGAGGAATGGAGCCAAAAGCCATACTACTTGGCCATTAAATTCCTTTACCAAGGTGGCCAAACAGAAATAAAAGCAATTGAAATAGCTGAGGTTGGTTCATGGGATTGGGAACCAATGAAGAGAAACTATGGTGCCATTTGGGATACAAACAAACTACTCGAAGGAGCTTTGCAATTGAAGATAACGGTAGCTTCTGGGGACAATAATGAGAACACATATTGGACAAATTACGATCTTCCTGATGATTGGCAAAATGGACAGATCTATGATACTGGAATTCAAATTGATGACATTGCTAAAGAAACTTGTCCACGAAAGCAGTGTGGTGATTTGCCATGGAAATAA 789 39.8 MALYLGLFLFLVSSAAACDRCVHQSKAAYYYDDTPIQHGACGYGPLAFELSNGYVAGIVPSLYKEGAGCGACFQVRCKDKRFCTTTGTKVVATDQNYDNRYDFVLSRKAYSAMALKNKAKELLNLGTVDIEYKRIPCTYPNKNLLVRVEEWSQKPYYLAIKFLYQGGQTEIKAIEIAEVGSWDWEPMKRNYGAIWDTNKLLEGALQLKITVASGDNNENTYWTNYDLPDDWQNGQIYDTGIQIDDIAKETCPRKQCGDLPWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28918575 28919916 - Lag0001296.1 Lac4g1176 604708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1176 262 Gene3D - 139 243 IPR036749 -
Lac4g1176 262 Gene3D - 11 138 IPR036908 -
Lac4g1176 262 PANTHER EXPANSIN-B3 8 245 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1176 262 Pfam Lytic transglycolase 59 132 IPR009009 -
Lac4g1176 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 156 239 IPR007117 -
Lac4g1176 262 SUPERFAMILY PHL pollen allergen 142 238 IPR036749 -
Lac4g1176 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 142 IPR007112 -
Lac4g1176 262 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576(InterPro)
Lac4g1176 262 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576(InterPro)
Lac4g1176 262 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Lac4g1176 262 PRINTS Expansin/Lol pI family signature 125 141 IPR007118 GO:0005576(InterPro)
Lac4g1176 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Lac4g1176 262 CDD DPBB_EXLA_N 13 139 - -
Lac4g1176 262 Pfam Expansin C-terminal domain 152 214 IPR007117 -
Lac4g1176 262 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1176 Lac-Chr4:28918575 Lac7g1274 Lac-Chr7:12188736 7.60E-77 dispersed
Lac4g1176 Lac-Chr4:28918575 Lac4g1177 Lac-Chr4:28958212 5.60E-112 tandem
Lac4g1001 Lac-Chr4:24788030 Lac4g1176 Lac-Chr4:28918575 1.30E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1176 - - - 0.0