Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1177 ATGGCTCCATTTCTCGCCTTTGTCGGCTTCTTTGTTCTCATCTATTCTACTACTGCTTGTGATCGATGTATTCATCAATCCAAGACTGCTTATTACTATAGTGATGCACCTATTCCATATGGGGCGTGTGGCTATGGTTCCTTTGCAAATGAATCTTTCAATGGATACATTGCTGGTGTTGTGCCTTCGCTTTACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAAAATAAGAAGCTATGCAGTCGAGTAGGAGCCAAAGTAGTTTTGACAGATCAAAATTATGATAATCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGGAATGGCTCGATGGGGGATGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATCGAATACAAGAGGGTACCTTGTGTATACAGAAATAAAAATTTGATGGTCCGAATAGAAGAATGGAGCAACAGGCCATATTACTTGGCAATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAACCTTTGAAGCGAAACTATGGAGCTATTTGGGATACAAGTAGAGTACCTGAAGGAGCACTGCAGTTACGGATAGTGGTTGCTTCAGGATATGATAACGAGAATTGGATCTGGACAAATTATGAACTTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGAATTCAAATTGCAGATATTGCTAAAGAATTTTGCCCTCTAAGAGAATGTGGGGATAGAATATGGAAATAA 795 39.75 MAPFLAFVGFFVLIYSTTACDRCIHQSKTAYYYSDAPIPYGACGYGSFANESFNGYIAGVVPSLYKQGAGCGACFQVRCKNKKLCSRVGAKVVLTDQNYDNRTDFVLSRKAFSGMARWGMAQDLLKLGMVDIEYKRVPCVYRNKNLMVRIEEWSNRPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEPLKRNYGAIWDTSRVPEGALQLRIVVASGYDNENWIWTNYELPADWKNGETYDTGIQIADIAKEFCPLRECGDRIWK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28958212 28959432 - Lag0001297.1 Lac4g1177 604709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1177 264 CDD DPBB_EXLA_N 16 141 - -
Lac4g1177 264 Gene3D - 14 139 IPR036908 -
Lac4g1177 264 SUPERFAMILY Barwin-like endoglucanases 11 142 IPR036908 -
Lac4g1177 264 Pfam Lytic transglycolase 60 134 IPR009009 -
Lac4g1177 264 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Lac4g1177 264 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Lac4g1177 264 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Lac4g1177 264 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1177 264 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Lac4g1177 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Lac4g1177 264 Gene3D - 141 245 IPR036749 -
Lac4g1177 264 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Lac4g1177 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Lac4g1177 264 PANTHER EXPANSIN-B3 11 247 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1177 264 Pfam Expansin C-terminal domain 148 216 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1001 Lac-Chr4:24788030 Lac4g1177 Lac-Chr4:28958212 3.10E-102 dispersed
Lac4g1169 Lac-Chr4:28590697 Lac4g1177 Lac-Chr4:28958212 7.30E-99 dispersed
Lac4g1170 Lac-Chr4:28616948 Lac4g1177 Lac-Chr4:28958212 2.20E-92 dispersed
Lac4g1177 Lac-Chr4:28958212 Lac7g1274 Lac-Chr7:12188736 5.90E-77 dispersed
Lac4g1176 Lac-Chr4:28918575 Lac4g1177 Lac-Chr4:28958212 5.60E-112 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1177 - - - 0.0