Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1180 ATGGCTTTGTTTGTCTGCCTTCTCTTTTTCTTCGTCGCCTCATCTGCCACCGCATGTGATCGTTGTGTTCACCAATCTAAAGCTGTCTATTTCCCAAATGATTCACCACTTTCATCTGGAACTTGTGGGTATGGCTCCTTAGCACTTGGCTTCCTCGACGGGCACCTCGCAGCGGGTGTCCCTTCCCTTTACAAAGAAGGTGTTCGTTGTGGCGCATGTTATCAGATAAGGTGCAAAGAGAAGAAAGTTTGCAGCAGAAGCGGGACCAAAGTAATTTTGACAGATGTGAATGTACACAGCAATAGAACTGATTTTATTTTGAGCAAGAAAGCTTTTTCTGCAATGGCTCAGAATGGCCAAGATAAGAATATTTTGAGACGTGGGACTCTCGATGTTGAATACAAGAGGATGCCTTGTGAATACAAAAAACAAAATGTGTCAGTAAGAATTGAAGAATCAAGCCAAAAGCCTCATCACATGGCTGTTAAGTTCCTAAACCAAGGTGGGCAGACAGACATGGTACTCGTTCACCTTCATCCGTCTATCAGCGATAGACTTCTATCACAGATAGAGTATGATTATAAAAGTCTATCAGTGATAGAGTCTTATCACTTGTAG 618 42.56 MALFVCLLFFFVASSATACDRCVHQSKAVYFPNDSPLSSGTCGYGSLALGFLDGHLAAGVPSLYKEGVRCGACYQIRCKEKKVCSRSGTKVILTDVNVHSNRTDFILSKKAFSAMAQNGQDKNILRRGTLDVEYKRMPCEYKKQNVSVRIEESSQKPHHMAVKFLNQGGQTDMVLVHLHPSISDRLLSQIEYDYKSLSVIESYHL 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29003511 29005717 - Lag0001300.1 Lac4g1180 604712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1180 205 Gene3D - 140 192 IPR036749 -
Lac4g1180 205 Pfam Lytic transglycolase 57 134 IPR009009 -
Lac4g1180 205 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Lac4g1180 205 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576(InterPro)
Lac4g1180 205 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Lac4g1180 205 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Lac4g1180 205 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Lac4g1180 205 PANTHER EXPANSIN-B3 3 180 - -
Lac4g1180 205 CDD DPBB_EXLA_N 14 141 - -
Lac4g1180 205 Gene3D - 12 139 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1180 Lac-Chr4:29003511 Lac7g1274 Lac-Chr7:12188736 1.40E-38 dispersed
Lac4g1180 Lac-Chr4:29003511 Lac4g1183 Lac-Chr4:29038182 6.90E-49 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1180 - - - 0.0