Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1183 ATGTCTATCTTACTTTCCTCTTTCTTCTTCTTCTTCTTTCTGGTTTCATCTGCCACTGAGTGTGATCGTTGTCCACACCAATCCAAGGCTGCTTATTTCTCCAGAGATTCACCACTTTCATCTGGAGCTTGTGGCTATGGTGCTTCCGCATTGAGCTTCTTTAATGGACACCTTGCAGCTGGTGTTCCTTCCCTTTACAAAGATGGAGCTCGATGTGGCGCTTGCTACCAGATTAGATGCAAAAGTAAAGGGCTTTGCTCTAAAGAAGGGACTAGAGTTATTTTGACTGATTTGAATCACAGTAATAAAACTGATTTTGTTTTGAGTAAGAAAGCTTTCTCTGCAATGACTCAAAAGGGCAAAGGCAAACAGATTCTGCAACAAGGGATTGTAGATGTTGAATATAAGAGGTGA 414 41.3 MSILLSSFFFFFFLVSSATECDRCPHQSKAAYFSRDSPLSSGACGYGASALSFFNGHLAAGVPSLYKDGARCGACYQIRCKSKGLCSKEGTRVILTDLNHSNKTDFVLSKKAFSAMTQKGKGKQILQQGIVDVEYKR 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29038182 29038817 - Lag0001303.1 Lac4g1183 604715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1183 137 CDD DPBB_EXLA_N 18 137 - -
Lac4g1183 137 Gene3D - 15 137 IPR036908 -
Lac4g1183 137 PANTHER EXPANSIN-B3 9 137 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Lac4g1183 137 Pfam Lytic transglycolase 59 135 IPR009009 -
Lac4g1183 137 SUPERFAMILY Barwin-like endoglucanases 10 137 IPR036908 -
Lac4g1183 137 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576(InterPro)
Lac4g1183 137 PRINTS Expansin/Lol pI family signature 128 137 IPR007118 GO:0005576(InterPro)
Lac4g1183 137 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576(InterPro)
Lac4g1183 137 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 137 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1183 Lac-Chr4:29038182 Lac7g1274 Lac-Chr7:12188736 8.20E-30 dispersed
Lac4g1180 Lac-Chr4:29003511 Lac4g1183 Lac-Chr4:29038182 6.90E-49 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1183 - - - 0.0