Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1220 ATGGATACGCTCAAGAAACCCTTCAAAGGCAATATATCTTTCAAGCACACACGGAGGATTTCTGCCGGCGTAGCCAGTACTACAGAATTCAATCACGAGGAGCTCCCCATTCTTCTCGATCACCAACTTGCCGATCATCATAATCGTCATAGGGATCGTCGCTTGCTGAACGATTGTGAACCGTCGGACCGCACGGAGGTAATTCTCAAGATCGATGATGGCGGTTCTTCGGCCGTTTCCAGATCTGTGGACTCTGCCGGCAATAATGGAGGGAAGGTTTGGCGGGAGCCCAGGTACGATTTCTGGAACAATGATGGAGTTGGAATTGGGGAAAATGCGTGTAGGGCTAGTGGTGCGAGAGCGAGTGATACTGGTGATAGAAATGAGGATTTTGAATTTGTACAGCGTGGTTATGGTATGGAGGATCCACCGACGAAGCTGATTGGGGAGTTTCTTAATAAGCAGAAAATTAGAGGCGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGCTACGCCAGGATAGGATTATTCCTCCATTGGCGGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCGTTCCAGCAGGATTCGCCTGAAATTTCGAGCAATGAGTCGGTCCGAAGGCGGTTCAGAGACTCTCGCGACTTGCAAGAAGAGTTCAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCGTGGATCTTCGACTATCTCTGCTATTCAGAATGAATCTGTTGCTGAGGCTATGAGATGCGCTTCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTCCAGAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCGAGATTGATTGACCCGCCTACAGAACCAGACCTGCTGTCTGGCCTCATTCCGAAATCGGGCCAGCTACGATCGGGGTTTCTTGGCAAGATTGACGACGACGACGACGATCCCTTTCTGGAAGAGGATCTTCCAGACGATTTTAAAAGGGGTAATTTCAGTGTTCTAACACTTCTGCAATGGGGCAAAGAGCCTGTGGGAGTTGTATATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGACGATTGGTTTCAGGTTGGGGATTAGGATTGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGAGTTCTGTATTTTGTATATGGGGTTAGGAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCTCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAGTCAAACCAACATCAATATACTCAATTATGTTAGGAAAATTTTAGTGTGTCTCTTGATGAGCACCTTGATTTGGCTAGTCAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTCTCAGGGCCACCCCTGATTGAAATTAAGAAGAATGAGGAAGAAGATGAGAGAATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTGACTATACCCCCTGATCTTAAGGCAGCAACCTTCTCTTCTGTAAAGAGTGGAAGGGTAATAGGCAGCGGACGGAACCAGAAAAGTTTTCGTGTTAGAAGTTCCAAATTCTCTCAAGCACTTGCCAAAAATGGAAACGATGGAATAACGATTGACCACTTGCACAAACTTAGTCCGAAGAATGTTTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGACGTGGTAGCATTTCCACACTGGATGAGCAGATACCGGGGCCTTGTCCCGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCAGCAGCAAAGAAGATTTTTCAAAACGTGGCTCGGCGTGGGTTTAAGTATATATATCTGGATGACTTGATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACAATGAGTCTCTTTGAAGGAGCAATTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTCGATAAACTGCACCATATGGTGAATGTGATATTCGGCATCCTTATATCAATTTTGTGGCTTATAGTACTAGGAATTGCCTCCAGCAAATTTTTCGCCCTCGTTAGTTCTCAAATAGTGGTCGTGGCATTCATTTTTGGAAACACTTGCAAGACCATATTTGAAGCAATCGTCTTCTTGTTTGTCATGCATCCATTTGACGTTGGAGATAGATGTGAAATCGATGGAATGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCTACCAAATTCATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCTGTAGAATTCTGTGTCCATATAGCGACGCCAGCTGAGAAAATTATGGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTATCCTTCCCCTATGATTGTGTTCAAGGATGTAGAGGGTCTAAATAAGCTGAGATTGGCAGTTTGGCTGTCGCACAGAATCAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCTGTCTTGGTCGAAGAGGTCGTGAAGGTCTGTCAAGAGCTTGACATTCAGTTTCGTCTATTGCCCCTCGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAACTAG 2799 44.52 MDTLKKPFKGNISFKHTRRISAGVASTTEFNHEELPILLDHQLADHHNRHRDRRLLNDCEPSDRTEVILKIDDGGSSAVSRSVDSAGNNGGKVWREPRYDFWNNDGVGIGENACRASGARASDTGDRNEDFEFVQRGYGMEDPPTKLIGEFLNKQKIRGETTLDMDLEMEELRQDRIIPPLAESPLSQTSKDLKVSFQQDSPEISSNESVRRRFRDSRDLQEEFKGGQSPWQQPHHERRGSSTISAIQNESVAEAMRCASNLSFQSELSFQRKSHLLRAKTKSRLIDPPTEPDLLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDDFKRGNFSVLTLLQWGKEPVGVVYMEMGGDGFGTDLWTIGFRLGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLISWHLLFNKRVESQTNINILNYVRKILVCLLMSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIKKNEEEDERIADEVQKLQNAGVTIPPDLKAATFSSVKSGRVIGSGRNQKSFRVRSSKFSQALAKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRRGSISTLDEQIPGPCPDDESTTEIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILISILWLIVLGIASSKFFALVSSQIVVVAFIFGNTCKTIFEAIVFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKFIHNFYRSPDMGESVEFCVHIATPAEKIMAMKQRIISYIEGHKEHWYPSPMIVFKDVEGLNKLRLAVWLSHRINHQDSGERWARRSVLVEEVVKVCQELDIQFRLLPLDINIRSLPSSAPSIGFPSN 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29814812 29818724 - Lag0001340.1 Lac4g1220 604752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1220 932 Gene3D - 761 810 IPR023408 -
Lac4g1220 932 MobiDBLite consensus disorder prediction 183 205 - -
Lac4g1220 932 MobiDBLite consensus disorder prediction 181 242 - -
Lac4g1220 932 SUPERFAMILY Sm-like ribonucleoproteins 751 810 IPR010920 -
Lac4g1220 932 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 371 922 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lac4g1220 932 Coils Coil 492 512 - -
Lac4g1220 932 MobiDBLite consensus disorder prediction 206 223 - -
Lac4g1220 932 FunFam Predicted mechanosensitive ion channel 761 810 - -
Lac4g1220 932 Pfam Mechanosensitive ion channel, beta-domain 754 810 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1220 Lac-Chr4:29814812 Lac9g1858 Lac-Chr9:38358597 0.00E+00 dispersed
Lac4g1220 Lac-Chr4:29814812 Lac3g1066 Lac-Chr3:8737565 1.10E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1220 K22048 - csv:101207426 1485.7