Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1220 ATGGATACGCTCAAGAAACCCTTCAAAGGCAATATATCTTTCAAGCACACACGGAGGATTTCTGCCGGCGTAGCCAGTACTACAGAATTCAATCACGAGGAGCTCCCCATTCTTCTCGATCACCAACTTGCCGATCATCATAATCGTCATAGGGATCGTCGCTTGCTGAACGATTGTGAACCGTCGGACCGCACGGAGGTAATTCTCAAGATCGATGATGGCGGTTCTTCGGCCGTTTCCAGATCTGTGGACTCTGCCGGCAATAATGGAGGGAAGGTTTGGCGGGAGCCCAGGTACGATTTCTGGAACAATGATGGAGTTGGAATTGGGGAAAATGCGTGTAGGGCTAGTGGTGCGAGAGCGAGTGATACTGGTGATAGAAATGAGGATTTTGAATTTGTACAGCGTGGTTATGGTATGGAGGATCCACCGACGAAGCTGATTGGGGAGTTTCTTAATAAGCAGAAAATTAGAGGCGAAACGACTTTGGATATGGATTTGGAAATGGAGGAGCTACGCCAGGATAGGATTATTCCTCCATTGGCGGAGTCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCGTTCCAGCAGGATTCGCCTGAAATTTCGAGCAATGAGTCGGTCCGAAGGCGGTTCAGAGACTCTCGCGACTTGCAAGAAGAGTTCAAAGGAGGACAATCGCCATGGCAACAACCGCACCATGAACGTCGTGGATCTTCGACTATCTCTGCTATTCAGAATGAATCTGTTGCTGAGGCTATGAGATGCGCTTCTAACTTGTCTTTTCAGAGCGAGCTTTCGTTCCAGAGGAAATCTCATTTGCTGAGGGCGAAAACCAAGTCGAGATTGATTGACCCGCCTACAGAACCAGACCTGCTGTCTGGCCTCATTCCGAAATCGGGCCAGCTACGATCGGGGTTTCTTGGCAAGATTGACGACGACGACGACGATCCCTTTCTGGAAGAGGATCTTCCAGACGATTTTAAAAGGGGTAATTTCAGTGTTCTAACACTTCTGCAATGGGGCAAAGAGCCTGTGGGAGTTGTATATATGGAAATGGGAGGTGATGGTTTTGGTACTGATTTGTGGACGATTGGTTTCAGGTTGGGGATTAGGATTGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGAGTTCTGTATTTTGTATATGGGGTTAGGAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCTCTTGGCATTTGTTGTTCAATAAGCGGGTTGAGAGTCAAACCAACATCAATATACTCAATTATGTTAGGAAAATTTTAGTGTGTCTCTTGATGAGCACCTTGATTTGGCTAGTCAAAACCCTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTTGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTCTCAGGGCCACCCCTGATTGAAATTAAGAAGAATGAGGAAGAAGATGAGAGAATTGCAGATGAAGTCCAAAAATTACAGAATGCAGGGGTGACTATACCCCCTGATCTTAAGGCAGCAACCTTCTCTTCTGTAAAGAGTGGAAGGGTAATAGGCAGCGGACGGAACCAGAAAAGTTTTCGTGTTAGAAGTTCCAAATTCTCTCAAGCACTTGCCAAAAATGGAAACGATGGAATAACGATTGACCACTTGCACAAACTTAGTCCGAAGAATGTTTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGACGTGGTAGCATTTCCACACTGGATGAGCAGATACCGGGGCCTTGTCCCGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCAGCAGCAAAGAAGATTTTTCAAAACGTGGCTCGGCGTGGGTTTAAGTATATATATCTGGATGACTTGATGCGGTTCATGAGAGAAGACGAGGTTTTCAAAACAATGAGTCTCTTTGAAGGAGCAATTGAAAACCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTCGATAAACTGCACCATATGGTGAATGTGATATTCGGCATCCTTATATCAATTTTGTGGCTTATAGTACTAGGAATTGCCTCCAGCAAATTTTTCGCCCTCGTTAGTTCTCAAATAGTGGTCGTGGCATTCATTTTTGGAAACACTTGCAAGACCATATTTGAAGCAATCGTCTTCTTGTTTGTCATGCATCCATTTGACGTTGGAGATAGATGTGAAATCGATGGAATGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATACGACAACCTGAAGACTATAATCCCAAATAGTGTTCTTGCTACCAAATTCATCCACAACTTCTACCGTAGTCCTGACATGGGCGAATCTGTAGAATTCTGTGTCCATATAGCGACGCCAGCTGAGAAAATTATGGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCCACAAAGAACACTGGTATCCTTCCCCTATGATTGTGTTCAAGGATGTAGAGGGTCTAAATAAGCTGAGATTGGCAGTTTGGCTGTCGCACAGAATCAACCACCAAGACTCAGGGGAAAGATGGGCTCGGAGGTCTGTCTTGGTCGAAGAGGTCGTGAAGGTCTGTCAAGAGCTTGACATTCAGTTTCGTCTATTGCCCCTCGATATCAATATCCGTTCATTGCCTTCTTCTGCACCCTCCATTGGCTTTCCATCTAACTAG 2799 44.52 MDTLKKPFKGNISFKHTRRISAGVASTTEFNHEELPILLDHQLADHHNRHRDRRLLNDCEPSDRTEVILKIDDGGSSAVSRSVDSAGNNGGKVWREPRYDFWNNDGVGIGENACRASGARASDTGDRNEDFEFVQRGYGMEDPPTKLIGEFLNKQKIRGETTLDMDLEMEELRQDRIIPPLAESPLSQTSKDLKVSFQQDSPEISSNESVRRRFRDSRDLQEEFKGGQSPWQQPHHERRGSSTISAIQNESVAEAMRCASNLSFQSELSFQRKSHLLRAKTKSRLIDPPTEPDLLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDDFKRGNFSVLTLLQWGKEPVGVVYMEMGGDGFGTDLWTIGFRLGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLISWHLLFNKRVESQTNINILNYVRKILVCLLMSTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIKKNEEEDERIADEVQKLQNAGVTIPPDLKAATFSSVKSGRVIGSGRNQKSFRVRSSKFSQALAKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRRGSISTLDEQIPGPCPDDESTTEIKSEREAKAAAKKIFQNVARRGFKYIYLDDLMRFMREDEVFKTMSLFEGAIENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILISILWLIVLGIASSKFFALVSSQIVVVAFIFGNTCKTIFEAIVFLFVMHPFDVGDRCEIDGMQMIVEEMNILTTVFLRYDNLKTIIPNSVLATKFIHNFYRSPDMGESVEFCVHIATPAEKIMAMKQRIISYIEGHKEHWYPSPMIVFKDVEGLNKLRLAVWLSHRINHQDSGERWARRSVLVEEVVKVCQELDIQFRLLPLDINIRSLPSSAPSIGFPSN 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29814812 29818724 - Lag0001340.1 Lac4g1220 604752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1220 932 Gene3D - 761 810 IPR023408 -
Lac4g1220 932 MobiDBLite consensus disorder prediction 183 205 - -
Lac4g1220 932 MobiDBLite consensus disorder prediction 181 242 - -
Lac4g1220 932 SUPERFAMILY Sm-like ribonucleoproteins 751 810 IPR010920 -
Lac4g1220 932 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 371 922 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Lac4g1220 932 Coils Coil 492 512 - -
Lac4g1220 932 MobiDBLite consensus disorder prediction 206 223 - -
Lac4g1220 932 FunFam Predicted mechanosensitive ion channel 761 810 - -
Lac4g1220 932 Pfam Mechanosensitive ion channel, beta-domain 754 810 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1220 K22048 - - csv:101207426 1485.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1220 Lac-Chr4:29814812 Lac9g1858 Lac-Chr9:38358597 0.00E+00 dispersed
Lac4g1220 Lac-Chr4:29814812 Lac3g1066 Lac-Chr3:8737565 1.10E-128 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac7g0215 . 153 543 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.6e-152 537.0
Lac7g0217 . 16 269 Mechanosensitive Ion Channel Family AT4G00290 63.0 2.8e-88 323.6
Lac5g1819 . 66 716 Mechanosensitive Ion Channel Family AT5G10490 59.8 1.7e-197 686.8
Lac6g1003 . 9 710 Mechanosensitive Ion Channel Family AT5G10490 53.9 2.2e-189 659.8
Lac6g1003 . 9 501 Mechanosensitive Ion Channel Family AT1G58200 68.4 6.8e-194 674.9
Lac5g1819 . 32 684 Mechanosensitive Ion Channel Family AT1G58200 52.5 1.0e-173 607.8
Lac9g1858 . 47 935 Mechanosensitive Ion Channel Family AT1G53470 56.0 3.5e-267 918.7
Lac9g1858 . 48 930 Mechanosensitive Ion Channel Family AT3G14810 54.0 4.4e-251 865.1
Lac9g1858 . 50 935 Mechanosensitive Ion Channel Family AT1G78610 60.5 4.7e-293 1004.6
Lac4g1220 . 62 923 Mechanosensitive Ion Channel Family AT1G78610 53.7 1.0e-242 837.4
Lac2g0114 . 88 629 Mechanosensitive Ion Channel Family AT1G78610 51.1 2.2e-149 527.3
Lac9g1858 . 226 931 Mechanosensitive Ion Channel Family AT2G17000 61.5 1.1e-238 823.9
Lac4g1220 . 272 926 Mechanosensitive Ion Channel Family AT2G17000 55.8 2.2e-202 703.4
Lac9g1858 . 1 674 Mechanosensitive Ion Channel Family AT2G17010 51.0 1.8e-162 570.5
Lac2g0488 . 69 722 Mechanosensitive Ion Channel Family AT5G19520 52.6 7.2e-181 631.7
Lac3g1066 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.8 1.4e-200 697.2
Lac2g0488 . 64 722 Mechanosensitive Ion Channel Family AT5G12080 55.9 2.1e-196 683.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67