Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1223 ATGGTTATGGAGGATAACGAGAGCTGTGGGAGTAGAGCCTACGACTCCTTGTCGCCGGCGCAGACACGGCAACAGAGGCAGAAGTTTGAGGTATACAATGAGGTTCTACGGCGGCTCAAGGATTCCAACAACCACGAGGCCATTCAGCCTGGTTTCGACGACGAACTATGGATTCACTTCAATCGCCTTCCTACTCGATATGCTCTAGACGTAAACGTGGAGAGGGCTGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCTGCAAATCGTCCTGCAATTGAAGTCCGCCTAGTGCAGGTTCAAGCCATTTCTGATAGTAATTCGGCTGATTTTGCTGATTCATACCCTGTAAAAGACACTGATCATAATTCTGCAAATTTATTGAGCAGACAGAGCGTACATCCACCACCTGCCTTTGGATCATCTCCTAACCTTGAAGCCCTGGCCCTTGAAGCTAATAATGCTCAGGATCTGGAGGTTGATCATTCTGTACATGCCAGAACACAGTTTTTCCGGCCGATGCATGAAATAACATTCTCTACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACCTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCTTTTTCTACTGTTGACGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGACTGCATTGGAGAAGGAAGTCTTACAGGTTGAGAGGCAGGCTTGGCCAAATCATAAATCCTTGTCTCCTGTAGGGGAACGGGATATATCAATTAAATCTGAACCTGATCGGGTGGAAATACCCACGGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTCGAGCATAAAGTCGCATCTGGGTCATATGGAGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTCCTTAAACCTGAACGTGTAAATTCAGATATGCAAAGTGAGTTCGCCCAGGAGGTATACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATTGGTGCATGTACTAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGCGGTAGTGTCTATGACTATCTACATAAACAAAAGGGCACTTTTAGACTTCCATCCTTGCTCAAGGTAGCCATTGATGTCTCGAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTAAAGGCTGCCAATCTTCTGATGGATGAAAATGAAGTTGTCAAGGTTGCCGATTTTGGTGTTGCCAGAGTGAAAGCTCAATCAGGAGTTATGACCGCAGAAACTGGGACATATCGCTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTTGGAATTGTCTTGTGGGAGCTGCTAACTGGAAAGCTACCTTATGAATTCCTAACCCCATTACAAGCTGCAGTCGGAGTAGTACAAAAGGGTTTACGGCCTACTATTCCGAAGCACACTAATCCCAAGCTGGCTGAGTTGCTGGAAAAATGTTGGCAGCAAGACCCGTCATGCAGGCCTGACTTCTCTGAAATTATCGATATATTGTTGCAGATAGCTAAGGAAGTTGCTGAAGATGGCGACGAACGACGAAAGGAGAAGAGTGGAGGATTCCTTTCTGTGTTGAGACGAAACCATCACTGA 1722 44.77 MVMEDNESCGSRAYDSLSPAQTRQQRQKFEVYNEVLRRLKDSNNHEAIQPGFDDELWIHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAISDSNSADFADSYPVKDTDHNSANLLSRQSVHPPPAFGSSPNLEALALEANNAQDLEVDHSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLQVERQAWPNHKSLSPVGERDISIKSEPDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKPERVNSDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENEVVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQIAKEVAEDGDERRKEKSGGFLSVLRRNHH 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29872632 29882099 - Lag0001343.1 Lac4g1223 604755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1223 573 PANTHER SERINE-THREONINE PROTEIN KINASE 129 545 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lac4g1223 573 FunFam serine/threonine-protein kinase HT1 372 562 - -
Lac4g1223 573 CDD ACT_TyrKc 179 246 - -
Lac4g1223 573 SUPERFAMILY Protein kinase-like (PK-like) 276 542 IPR011009 -
Lac4g1223 573 Gene3D Transferase(Phosphotransferase) domain 1 372 565 - -
Lac4g1223 573 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
Lac4g1223 573 CDD STKc_MAP3K-like 299 542 - -
Lac4g1223 573 Coils Coil 231 251 - -
Lac4g1223 573 MobiDBLite consensus disorder prediction 11 25 - -
Lac4g1223 573 Pfam Protein tyrosine and serine/threonine kinase 293 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 SUPERFAMILY ACT-like 179 243 IPR045865 -
Lac4g1223 573 MobiDBLite consensus disorder prediction 1 25 - -
Lac4g1223 573 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1223 573 Gene3D Phosphorylase Kinase; domain 1 283 371 - -
Lac4g1223 573 ProSiteProfiles ACT domain profile. 181 253 IPR002912 -
Lac4g1223 573 SMART serkin_6 293 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0115 Lac-Chr2:887787 Lac4g1223 Lac-Chr4:29872632 1.00E-201 dispersed
Lac2g0487 Lac-Chr2:3545490 Lac4g1223 Lac-Chr4:29872632 1.70E-44 dispersed
Lac4g1223 Lac-Chr4:29872632 Lac5g0072 Lac-Chr5:625725 1.30E-230 dispersed
Lac1g2891 Lac-Chr1:49823010 Lac4g1223 Lac-Chr4:29872632 4.50E-54 transposed
Lac7g0183 Lac-Chr7:1462043 Lac4g1223 Lac-Chr4:29872632 8.70E-24 transposed
Lac1g0984 Lac-Chr1:25836743 Lac4g1223 Lac-Chr4:29872632 1.70E-17 wgd
Lac4g1223 Lac-Chr4:29872632 Lac5g1610 Lac-Chr5:32801458 1.80E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86123 PF07714 PK_Tyr_Ser-Thr 7.50E-75 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1223 - - - 0.0