Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1279 ATGATTAGCGGAGGAATAAAGAATGAGAAGTCAGTCCAGTTGTACGATGTGGAGGATTCTTTGGATGAGATGAGGGATGTTATCGGAGTTGATGAACTTTTTGAGGGCCTGTTTTCGGCCGAGCTCCGATCGGCCAACAATTTGCTCGAAGATCAGAGCCAGATTGAGTCAGGCAGTTTGAGCTCAGTTGAGTCTGGTCCCAGAGGGACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAAACTTCTCGGTATATCTGTGATCATCTCTTTCAGCATCTCAAGAGATTTGCTTCTGAGCAAGATTCAATGTCTGCGGATGTAATACGCAAGGCATTCCAGGCGACAGAAGAGGGTTTTCTTTCTGTAGTCCGAAGACAATGGTCAACAAATCCACAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATCTGTAATGGGACTCTCTATGTTGCAAATTTAGGTGATTCACGTGCTGTTTTGGGTAGAGTAGTGAAAGCAACCGGTGAGGTTCTAGCCATTCAGTTATCAACAGAACACAACGTTTCTAACGAATCTGTGAGGCAAGAGCTGCAATCTTTGCACCCTGAAGACTCACAAATTGTGGTTTTAAAGCATAATGTTTGGCGAGTAAAGGGCATAATACAGATATCCAGATCTATAGGCGATGTCTACTTGAAAAAAGCTGAGTTCAATAGAGAACCTCTGTATTTAAAGTTTCGAGTTCGGGAACCTTTCAGCAAGCCAATTTTGAGCTCTGAACCATCGATTTCTGAGATCCAGTTGAAGCCAGATGATCAATTTATTATATTTGCATCTGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCAATATAGTTCGTAACCACTCTCAAAGTGGAAGTGCAAGAAGATTGGTCAGAGCTGCTCTTCAAGTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGACTTGAAGAAGATTGACCGTGGTGTTCGTCGCCATTTCCATGACGACATCACCGTGGTGGTTGTGTTTCTTGATACAAATCTGCTCTTCAGAGCCAGCTCCACGAAGAGCTTGAGTGTCTCGCTACGAGGAGGTGGAGTCAACCGGCTTCCTAACTCTCTAGCCCCTGTCACCACGCCCATGTAG 1149 44.82 MISGGIKNEKSVQLYDVEDSLDEMRDVIGVDELFEGLFSAELRSANNLLEDQSQIESGSLSSVESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFASEQDSMSADVIRKAFQATEEGFLSVVRRQWSTNPQIAAVGSCCLVGVICNGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSLHPEDSQIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYLKFRVREPFSKPILSSEPSISEIQLKPDDQFIIFASDGLWEHLSNQEAVNIVRNHSQSGSARRLVRAALQVAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLLFRASSTKSLSVSLRGGGVNRLPNSLAPVTTPM 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30786009 30790148 - Lag0001399.1 Lac4g1279 604811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1279 382 Gene3D - 9 352 IPR036457 -
Lac4g1279 382 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Lac4g1279 382 SMART PP2C_4 24 343 IPR001932 -
Lac4g1279 382 CDD PP2Cc 38 345 IPR001932 -
Lac4g1279 382 Pfam Protein phosphatase 2C 61 312 IPR001932 -
Lac4g1279 382 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169(InterPro)
Lac4g1279 382 ProSiteProfiles PPM-type phosphatase domain profile. 36 345 IPR001932 -
Lac4g1279 382 FunFam Phosphatase 2C family protein 29 355 - -
Lac4g1279 382 PANTHER PROTEIN PHOSPHATASE 46 344 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3042 Lac-Chr1:51058272 Lac4g1279 Lac-Chr4:30786009 2.30E-149 dispersed
Lac4g1279 Lac-Chr4:30786009 Lac5g0081 Lac-Chr5:679443 7.80E-147 dispersed
Lac3g2944 Lac-Chr3:46915633 Lac4g1279 Lac-Chr4:30786009 2.30E-10 wgd
Lac4g1279 Lac-Chr4:30786009 Lac9g1843 Lac-Chr9:38204733 1.10E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1279 - - - 0.0