Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1299 ATGTCGAAAGAGGTCACGGAAGAGGGACAGTCCGGTCTTAGAAAGGACTACGTCGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTCTACAGAGCCCTAATCGCCGAATTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAGCAGACCAAGATTTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCTGGAATCTCCGGCGGGCACATCAATCCGGCGGTGACATTTGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCGGTGGCGTACATGTTGGCGCAGTGCGCCGGAGCCATCGTCGGCGTTGGCCTGGTCAAGGCTTTCATGAAGCATGATTATAACCAGCAGGGCGGCGGAGCCAACTCCGTTAATTCTGGGTACAGTCGGGGCACGGCTCTCGGCGCTGAGATTATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCCACTGATCCCAAGAGGAGCGCGCGTGACTCTCACATACCGGTTTTGGCTCCACTGCCCATCGGCTTCGCCGTGTTCATGGTTCATCTGGCCACCATTCCGATCACCGGAACCGGAATCAACCCAGCCAGAAGCTTCGGCGCCGCCGTCATCTTCAACAGTGAGAAAGCCTGGAACGACCACTGGATCTTTTGGGTGGGTCCGTTCGTCGGAGCACTGGCGGCGGCGGCGTACCACCAGTATATTCTCCGGGCAGCCGCCATAAAAGCTTTGGGATCATTCCGCAGCAACCCCACCAACTGA 843 58.6 MSKEVTEEGQSGLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKICDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMLAQCAGAIVGVGLVKAFMKHDYNQQGGGANSVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSEKAWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31049299 31050378 - Lag0001419.1 Lac4g1299 604831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1299 280 Pfam Major intrinsic protein 31 259 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Lac4g1299 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Lac4g1299 280 FunFam Probable aquaporin PIP1-2 23 278 - -
Lac4g1299 280 NCBIfam MIP family channel protein 42 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac4g1299 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Lac4g1299 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Lac4g1299 280 CDD MIP 38 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1299 Lac-Chr4:31049299 Lac8g2417 Lac-Chr8:42264865 1.30E-119 dispersed
Lac4g1299 Lac-Chr4:31049299 Lac9g1835 Lac-Chr9:38123000 3.90E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1299 K09872 - csv:101209627 545.428