Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1318 ATGGACGACGGGGAGCTTGATTTTTCGAATCAAGAAGTGTTTTCGAGTCCTAATATGGAGCTTCCCAGCAGTTGCTCAATGGATAGTTTCTTTGATGATCTTCTCAAGGACACTCATACTTGTACTCATACTCATACTTGCAATCCACCGGGCCCGGATTATTCTCATACCCACACCTGTTTTCACGTCCACACTAAATTTGTCCCTGCCCCAAATGAAGACAAGGTTGTTACTGATGATACAGCAGAATCGACTGAGAAGAAGTCAAAGAAACGCCCGTTGGGTAACCGGGAAGCTGTTCGTAAGTATCGCGAGAAGAAGAAGGCTAGGGCAGCCTCATTGGAGGATGAGGTTGTCAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAGGGGCAGGCAGCACTTGAGGCTGAGGTTGCTAGGCTCAAGTGTTTGCTTGTGGATATTAGGGGCAGAATTGAAGGGGAGATTGGTTCTTTCCCTTACCAGAAAGCTGTTAATCCTAACCTGTCCAACCCAAGCATTCCTGGTGCTTATGTGATGAACCCATGTAATATGCAGTGTGAGGATCAGGTTTACTGCCTCCATCCTGGGGTTGATGGCAGCAGAAGCAGTGAAGATGTTGTGATAAATGGACAGACCTTCGGTGCTTGTGAATTTGAAAATCTTCAGTGTTTGGCAAATCATGACTCAGGATCAAAAGAGCTACCTGGGTGTGGGATAGGGAATGCGGTTTCAAATGATATTTCTTCAGGAGCAACGAAGAAAAAAGGTGAAATCTGA 792 45.71 MDDGELDFSNQEVFSSPNMELPSSCSMDSFFDDLLKDTHTCTHTHTCNPPGPDYSHTHTCFHVHTKFVPAPNEDKVVTDDTAESTEKKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKAVNPNLSNPSIPGAYVMNPCNMQCEDQVYCLHPGVDGSRSSEDVVINGQTFGACEFENLQCLANHDSGSKELPGCGIGNAVSNDISSGATKKKGEI 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31291197 31291988 - Lag0001438.1 Lac4g1318 604850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1318 263 CDD bZIP 90 143 - -
Lac4g1318 263 MobiDBLite consensus disorder prediction 72 105 - -
Lac4g1318 263 FunFam Basic leucine zipper 24 74 152 - -
Lac4g1318 263 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 184 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Lac4g1318 263 Gene3D - 74 152 - -
Lac4g1318 263 MobiDBLite consensus disorder prediction 76 102 - -
Lac4g1318 263 Pfam Basic region leucine zipper 85 141 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1318 263 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 86 133 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1318 263 Coils Coil 97 131 - -
Lac4g1318 263 SMART brlzneu 84 151 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1318 263 SUPERFAMILY Leucine zipper domain 88 134 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1318 Lac-Chr4:31291197 Lac9g1827 Lac-Chr9:38077918 2.50E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23684 PF07716 bZIP_2 9.10E-14 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1318 K25785 - csv:101208161 485.723