Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1355 ATGCTTAAGTCAGCAAGCAGAACGGTAGGGAGTGGAAAAGATTTCGGAGGCATTTTCGGTCAAAGCAGGCAACCCCGGGGCAGATGGAAGCAGTGGGGACCTAACGGCACCAGACGGGCTCGGCCTCGGCCATGGGCCGAGGCCGAGCACGGGGTCGGGCCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCCACTTACCGGTTTTGCTCCTTGGTCCATCTCTCAGCCCGATTTCTCCTCGGTTGCCCTCCCAGCTTCTGCAGCTGAAACAAGACAAGCACTACCTTTCAAACATCTTCTGTCTTCTGCTGCAATGGAGTTCCACTCACGACACCTGGCCTCTCCAAAGGCATTGTTCTTGCCTTCTGTGGATTCAAATTTCTGGGAATATATGCCTTTCTTTTGCTGTTTGATTGATAGCTCAAGTCTTGAACTATGTGTTTGTGCTGCAGATTGTTATGATCCCTTGGATCCAAATGGAAACATTACGATTACTTATGATATTCAAACTTGGACGACTCGTGGATATGTGGGGAAGGTCACTGTCCAAAACTACTATCAGTTCCGGCATGTGGAGAATCCTGGTTGGCAGCTGGGGTGGACATGGACAAGGGATGAAGTCATCTGGTCAATGAGCGGAGCTTTTGCGACCGAGCAGGGGAATTGCTCGTTGTTCAAGTTTGACACTCCACACTCCTGTGAGAAGAGCCCTGTCATTCTCGATCTAATGCCGGAAGCATCCCCGGAAAACCGGTCAGAGGGTTGCTGCCACGGTGGGGTTCTTTCTGCTTGGGCTGTGGACCCTTCCAAGTCTTTCTCTTCGTTTGAAATCTTAGTGGGGAGCGAAGATGGAGATGGCAAGGAGCAACCGCCAGCCAATGTTACTCTCATGGCGCCTGGTCCTGGTTACACTTGCAGCCCATTTTTGGATGCTCATCCAACAGTTTCTTCTGTCATTGATGGCAAAAGACAAGTTCAGGTTTTCAGTAAGTACTTTAAATATCAATTGCAATGCTAG 1020 50.49 MLKSASRTVGSGKDFGGIFGQSRQPRGRWKQWGPNGTRRARPRPWAEAEHGVGPKTRPLRSWPVPLTGFAPWSISQPDFSSVALPASAAETRQALPFKHLLSSAAMEFHSRHLASPKALFLPSVDSNFWEYMPFFCCLIDSSSLELCVCAADCYDPLDPNGNITITYDIQTWTTRGYVGKVTVQNYYQFRHVENPGWQLGWTWTRDEVIWSMSGAFATEQGNCSLFKFDTPHSCEKSPVILDLMPEASPENRSEGCCHGGVLSAWAVDPSKSFSSFEILVGSEDGDGKEQPPANVTLMAPGPGYTCSPFLDAHPTVSSVIDGKRQVQVFSKYFKYQLQC 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31732091 31735437 - Lag0001475.1 Lac4g1355 604887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1355 339 Pfam COBRA-like protein 177 331 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Lac4g1355 339 MobiDBLite consensus disorder prediction 1 54 - -
Lac4g1355 339 PANTHER PROTEIN COBRA 145 330 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1355 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1355 Lac-Chr4:31732091 Lac8g2760 Lac-Chr8:44907949 2.40E-46 dispersed
Lac13g0028 Lac-Chr13:233770 Lac4g1355 Lac-Chr4:31732091 1.10E-19 transposed
Lac2g1782 Lac-Chr2:17042279 Lac4g1355 Lac-Chr4:31732091 1.00E-09 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0548 . 48 454 COBRA Gene Family AT5G60920 80.1 7.4e-212 733.8
Lac8g2760 . 61 454 COBRA Gene Family AT5G60920 69.8 2.5e-183 639.0
Lac4g0341 . 31 427 COBRA Gene Family AT5G60920 68.8 2.9e-179 625.5
Lac3g0547 . 103 502 COBRA Gene Family AT5G60920 67.3 7.8e-177 617.5
Lac10g0179 . 19 414 COBRA Gene Family AT5G60920 61.0 2.4e-154 542.7
Lac5g2477 . 54 439 COBRA Gene Family AT5G60920 56.2 2.0e-132 469.9
Lac4g0343 . 42 235 COBRA Gene Family AT5G60920 71.8 2.9e-91 333.2
Lac4g0330 . 29 145 COBRA Gene Family AT5G60920 79.5 1.4e-53 208.0
Lac4g0342 . 13 121 COBRA Gene Family AT5G60920 64.9 1.6e-36 151.4
Lac3g0548 . 18 451 COBRA Gene Family AT3G02210 73.5 1.6e-207 719.5
Lac8g2760 . 47 452 COBRA Gene Family AT3G02210 67.5 1.5e-181 633.3
Lac3g0547 . 75 501 COBRA Gene Family AT3G02210 66.4 1.4e-179 626.7
Lac4g0341 . 5 430 COBRA Gene Family AT3G02210 65.2 1.1e-176 617.1
Lac10g0179 . 5 412 COBRA Gene Family AT3G02210 59.3 5.4e-155 545.0
Lac5g2477 . 23 447 COBRA Gene Family AT3G02210 54.1 5.8e-141 498.4
Lac4g0343 . 12 235 COBRA Gene Family AT3G02210 73.6 1.7e-100 364.0
Lac4g0330 . 31 145 COBRA Gene Family AT3G02210 77.4 1.7e-52 204.5
Lac3g0548 . 18 446 COBRA Gene Family AT3G29810 74.7 9.8e-202 700.3
Lac8g2760 . 43 454 COBRA Gene Family AT3G29810 68.5 1.5e-181 633.3
Lac4g0341 . 14 410 COBRA Gene Family AT3G29810 67.8 6.0e-175 611.3
Lac3g0547 . 86 484 COBRA Gene Family AT3G29810 67.2 1.3e-174 610.1
Lac10g0179 . 7 395 COBRA Gene Family AT3G29810 60.9 4.9e-153 538.5
Lac5g2477 . 36 433 COBRA Gene Family AT3G29810 55.9 5.9e-138 488.4
Lac4g0343 . 10 235 COBRA Gene Family AT3G29810 67.9 4.3e-96 349.4
Lac4g0330 . 26 137 COBRA Gene Family AT3G29810 79.5 2.9e-52 203.8
Lac4g1355 . 152 327 COBRA Gene Family AT3G29810 52.0 7.1e-51 199.1
Lac3g0547 . 80 411 COBRA Gene Family AT5G15630 83.7 3.4e-178 621.7
Lac4g0341 . 9 339 COBRA Gene Family AT5G15630 81.9 3.6e-175 611.7
Lac3g0548 . 31 361 COBRA Gene Family AT5G15630 73.2 8.8e-150 527.3
Lac10g0179 . 5 323 COBRA Gene Family AT5G15630 64.9 1.1e-136 483.8
Lac8g2760 . 45 372 COBRA Gene Family AT5G15630 64.8 3.6e-135 478.8
Lac4g0343 . 27 235 COBRA Gene Family AT5G15630 65.6 3.7e-87 319.3
Lac3g0548 . 18 224 COBRA Gene Family AT5G60950 57.2 4.4e-64 241.9
Lac8g2760 . 57 237 COBRA Gene Family AT5G60950 58.0 2.1e-58 223.0
Lac4g0341 . 8 207 COBRA Gene Family AT5G60950 54.2 2.4e-57 219.5
Lac3g0547 . 99 279 COBRA Gene Family AT5G60950 56.9 1.5e-56 216.9
Lac4g0343 . 8 203 COBRA Gene Family AT5G60950 51.2 3.3e-51 199.1
Lac10g0179 . 15 195 COBRA Gene Family AT5G60950 51.9 1.1e-49 194.1
Lac5g2477 . 27 436 COBRA Gene Family AT1G09790 60.0 1.6e-151 533.5
Lac3g0548 . 32 432 COBRA Gene Family AT1G09790 54.1 2.0e-133 473.4
Lac3g0547 . 89 482 COBRA Gene Family AT1G09790 53.4 8.2e-132 468.0
Lac8g2760 . 47 442 COBRA Gene Family AT1G09790 51.7 1.9e-128 456.8
Lac4g0341 . 3 410 COBRA Gene Family AT1G09790 51.1 4.2e-128 455.7
Lac4g0330 . 29 137 COBRA Gene Family AT1G09790 66.4 5.5e-43 172.9
Lac7g0923 . 31 609 COBRA Gene Family AT4G16120 62.3 1.1e-236 817.0
Lac5g1439 . 63 655 COBRA Gene Family AT4G16120 54.3 2.1e-203 706.4
Lac2g1368 . 133 744 COBRA Gene Family AT4G16120 52.2 1.6e-200 696.8
Lac7g0923 . 6 615 COBRA Gene Family AT3G16860 58.2 1.4e-223 773.5
Lac5g1439 . 56 655 COBRA Gene Family AT3G16860 51.4 6.1e-192 668.3
Lac2g1368 . 130 744 COBRA Gene Family AT3G16860 50.6 1.8e-191 666.8
Lac7g0923 . 9 610 COBRA Gene Family AT5G49270 58.0 1.1e-220 763.8
Lac5g1439 . 53 655 COBRA Gene Family AT5G49270 51.6 1.5e-193 673.7
Lac2g1368 . 98 754 COBRA Gene Family AT3G20580 61.1 1.9e-249 859.4
Lac5g1439 . 10 676 COBRA Gene Family AT3G20580 59.3 8.1e-248 854.0
Lac7g0923 . 27 611 COBRA Gene Family AT3G20580 52.0 2.9e-197 686.0
Lac5g1439 . 39 677 COBRA Gene Family AT4G27110 61.7 6.0e-243 837.8
Lac2g1368 . 114 757 COBRA Gene Family AT4G27110 59.2 2.1e-232 802.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34