Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1383 ATGGGTGATACTGAAGATGCTAATACTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGCATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCGCAAATGAACTGCTCACAAATTCGTCCACCGCACTTTCAGTCAAATTTTCTTGGTGATAATAGTAGAAGAGTTGGAATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCTCGATCTCGCGTCCGATGAACCAGCAAAGTTATAACCCAGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAGTCCCCAACTACATCGAATTCAGACCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGAGCTAATTCTTCTAAGATGGGAGATTCTTTACCCCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCTATGATTCAGCCATCTCCTCTTCTCCCATTCAGTGGCTCTGGTGGGTTGGAGCGATCAACAAGTAGTAAAGAGAATGCTGGCATATTAAAGCCGGCCAACCAGTTTGTTAAAAGAGAACCTATTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCCGATGGGGACAGTGTGGATGACTTATTTTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCTTCGGGGACCAACGACAAGAATGGTCATGATAATCGAGAGGATTTAGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGATAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAACACTCAAATGCCTGGATTGACTTCCTCTACTGAGAAGAGGGAAGGGATCAAACGGACTGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAATTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCCGGGCAACTTTCACCAAACAACCTAGTTGATGGTAATTCAGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAACGACAAACTTGCTGAGATTGCTTTAACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGTAAGATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACATTGTCTGCCCAACTCACACTTTTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTAAACGAAGCCCTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACGACTGAGATAAACGCACAATCTCATCCCTCTAATGGAGTAATGCACCAACCTTCCATCAGCCACCATAGCCTCCAGCTTCAGCTTCAGCAGCAGCACCAGCACCACCAACAACAGCAACAGATGCAGCAGAATGGGAGTGCAAGCACAAAACCAGAGTCCAACCAATAA 1713 44.54 MGDTEDANTENMRNLQCSYGASSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLGDNSRRVGIPPSPNSPQIPPISPYSQISISRPMNQQSYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFSGSGGLERSTSSKENAGILKPANQFVKREPILEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGHDNREDLDSRGSGTKTNGGDSSDNEAESSVNESGDNTQMPGLTSSTEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSPNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTEINAQSHPSNGVMHQPSISHHSLQLQLQQQHQHHQQQQQMQQNGSASTKPESNQ 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32106202 32108697 - Lag0001503.1 Lac4g1383 604915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1383 570 MobiDBLite consensus disorder prediction 49 187 - -
Lac4g1383 570 SMART brlzneu 418 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1383 570 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1383 570 MobiDBLite consensus disorder prediction 357 378 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 522 570 - -
Lac4g1383 570 Coils Coil 501 521 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 49 67 - -
Lac4g1383 570 Coils Coil 438 493 - -
Lac4g1383 570 Gene3D - 421 473 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 268 343 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 77 115 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 202 216 - -
Lac4g1383 570 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 560 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac4g1383 570 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1383 570 FunFam probable transcription factor PosF21 421 474 - -
Lac4g1383 570 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1383 570 MobiDBLite consensus disorder prediction 199 220 - -
Lac4g1383 570 MobiDBLite consensus disorder prediction 289 322 - -
Lac4g1383 570 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1383 570 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0542 Lac-Chr12:5835041 Lac4g1383 Lac-Chr4:32106202 7.90E-10 dispersed
Lac4g1383 Lac-Chr4:32106202 Lac8g1685 Lac-Chr8:34972939 9.50E-40 dispersed
Lac4g1383 Lac-Chr4:32106202 Lac4g1385 Lac-Chr4:32117903 2.60E-279 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23688 PF00170 bZIP_1 1.00E-08 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1383 - - - 0.0