Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1385 ATGGGTGATACTGAAGACGCTCATACTGATAACATACGAAATCTTCAATGTTCGTTTGGAACATCTTCTTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTCCACAGCACTTTCAGTCTAATTTTCTTGGAGATAACAATAGAAGAATTGGGATACCGCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAACCAGCAGAGTTATAACCCAGTGCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCGTCTCCGTTTCGTGACTCCCCATCTACATCAAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATGCCAGTTCACATTCTCTGTTGCCTCCCTCGCCGTATATGAGGGCCAATTCTCATAAGATGGGAGATGCTTTACCCCCTCGTAAAGCCCATAGGCGGTCTAATAGTGACATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGTAAAGAGAATGCGGGCGTATTCAAGCCGGCCAGCCAGTTTGTTAAAAGAGAAGTTAGTTTGGAGAAAAGCATCGATAACAATTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGAGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGACAGTATTGATTTGTTCAACTCTTCAGGGACCAACGACAAGAATGGTCTTGAGAATCAGGAGGATTTGGATAGTAGGGGTAGTGGGACAAAGACAGGGGGTGACAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGTGGGGATAACACTCAAATGCCTGGATTGACTTCCGCTACTGAGAAGAGGGAAGGGATCAAACGGACTGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTATCTCCATGGATAGTTTCATGGGTAAATTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCCGGGCAACTTTCTCCAAACAACCTAGTTGATGGTAATTCAGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAACGACAAACTTGCTGAGATTGCTTTAACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCAAAAGAACGTAAGATGCGCTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACATTGTCTGCCCAACTCACACTTTTACAGAGAGATTCAGTTGGACTTACAAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTAAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAGCTCGCTACGACTGAGATAAACGCACAATCTCATCCCTCAAATGGCGTATTGGCTCAACCTTCTATGAATCACCATGGACTCCAGCTTCAGCAGCAGCAGCAGCACCAACAACAACAGCAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1704 45.01 MGDTEDAHTDNIRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQIPPISPYSQIPISRPMNQQSYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYMRANSHKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGVFKPASQFVKREVSLEKSIDNNLEGMGERKSEGDTVDDLFSAYMNLDSIDLFNSSGTNDKNGLENQEDLDSRGSGTKTGGDSSDNEAESSVNESGDNTQMPGLTSATEKREGIKRTAGGDIAPTTRHYRSISMDSFMGKLQFGDESPKMPPTPPGVRPGQLSPNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTEINAQSHPSNGVLAQPSMNHHGLQLQQQQQHQQQQQHMQQNGSATTKPESNQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32117903 32121216 - Lag0001505.1 Lac4g1385 604917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1385 567 SMART brlzneu 417 481 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1385 567 Coils Coil 437 492 - -
Lac4g1385 567 MobiDBLite consensus disorder prediction 43 59 - -
Lac4g1385 567 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1385 567 MobiDBLite consensus disorder prediction 357 378 - -
Lac4g1385 567 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1385 567 MobiDBLite consensus disorder prediction 287 320 - -
Lac4g1385 567 Coils Coil 500 520 - -
Lac4g1385 567 FunFam probable transcription factor PosF21 420 473 - -
Lac4g1385 567 MobiDBLite consensus disorder prediction 83 115 - -
Lac4g1385 567 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1385 567 Gene3D - 420 472 - -
Lac4g1385 567 MobiDBLite consensus disorder prediction 269 343 - -
Lac4g1385 567 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1385 567 MobiDBLite consensus disorder prediction 521 567 - -
Lac4g1385 567 MobiDBLite consensus disorder prediction 43 182 - -
Lac4g1385 567 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 156 556 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac4g1385 567 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1385 Lac-Chr4:32117903 Lac8g1685 Lac-Chr8:34972939 1.50E-40 dispersed
Lac4g1383 Lac-Chr4:32106202 Lac4g1385 Lac-Chr4:32117903 2.60E-279 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23689 PF00170 bZIP_1 9.90E-09 CL0018 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1385 - - - 0.0