Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1427 ATGAAGATCCGTTGCGATGTTTGCGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCCAGGTTCTCCCTACTTCAGCCGATCAAAACGGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAGTGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACGATGCCGCCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGAAAGAGGCCTAAAATGACCGCGAACGAAATCTCGAGCTCTCATTCCACTGAAATAGCTGCTCCGTCGACAAGCAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTGGCATTTGGGAATCAAAATCTGGAGGGCCAACAAGAATCGATAGGCACCACCTTGAAATTTTTAGGTAACATTTCTCAAACTAGGTCTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGTTGATCAGATCATCAGCAGCTTTGGCTCTGAGACAATTCTGGAACTAACCAACAGTGGTGGGACAACTTTTTCGTTTCATAATAAGAGACCTGGATGA 882 48.19 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKTDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSNGYDAAMDVKTGSSHACRKRPKMTANEISSSHSTEIAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAFGNQNLEGQQESIGTTLKFLGNISQTRSWNGVGISMKTCRGEKMAVVDQIISSFGSETILELTNSGGTTFSFHNKRPG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32701744 32703393 - Lag0001547.1 Lac4g1427 604959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1427 293 MobiDBLite consensus disorder prediction 141 169 - -
Lac4g1427 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac4g1427 293 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 FunFam B-box zinc finger protein 21 1 98 - -
Lac4g1427 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac4g1427 293 MobiDBLite consensus disorder prediction 142 169 - -
Lac4g1427 293 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lac4g1427 293 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 Gene3D Classic Zinc Finger 1 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0172 Lac-Chr2:1303501 Lac4g1427 Lac-Chr4:32701744 8.90E-45 dispersed
Lac4g1427 Lac-Chr4:32701744 Lac5g2421 Lac-Chr5:42833531 7.80E-30 dispersed
Lac1g2401 Lac-Chr1:45428780 Lac4g1427 Lac-Chr4:32701744 3.10E-28 transposed
Lac4g1427 Lac-Chr4:32701744 Lac6g0470 Lac-Chr6:3872291 2.20E-48 wgd
Lac4g1427 Lac-Chr4:32701744 Lac9g1735 Lac-Chr9:36988123 1.10E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23692 PF00643 zf-B_box 6.50E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1427 - - - 0.0