Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1427 ATGAAGATCCGTTGCGATGTTTGCGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCCAGGTTCTCCCTACTTCAGCCGATCAAAACGGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAGTGCGACATTTCGATTCACGAAGCGAACGAACACACGCAGAAGCACAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTGTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACGATGCCGCCATGGATGTTAAAACTGGAAGCTCCCACGCTTGCAGAAAGAGGCCTAAAATGACCGCGAACGAAATCTCGAGCTCTCATTCCACTGAAATAGCTGCTCCGTCGACAAGCAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAATGGCGAAATTCTGGCATTTGGGAATCAAAATCTGGAGGGCCAACAAGAATCGATAGGCACCACCTTGAAATTTTTAGGTAACATTTCTCAAACTAGGTCTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGTTGATCAGATCATCAGCAGCTTTGGCTCTGAGACAATTCTGGAACTAACCAACAGTGGTGGGACAACTTTTTCGTTTCATAATAAGAGACCTGGATGA 882 48.19 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLQPIKTDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSTCFSYQTSSSSNGYDAAMDVKTGSSHACRKRPKMTANEISSSHSTEIAAPSTSNYKVEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSTAAANRFCKFNGEILAFGNQNLEGQQESIGTTLKFLGNISQTRSWNGVGISMKTCRGEKMAVVDQIISSFGSETILELTNSGGTTFSFHNKRPG 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32701744 32703393 - Lag0001547.1 Lac4g1427 604959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1427 293 MobiDBLite consensus disorder prediction 141 169 - -
Lac4g1427 293 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac4g1427 293 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 FunFam B-box zinc finger protein 21 1 98 - -
Lac4g1427 293 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 218 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac4g1427 293 MobiDBLite consensus disorder prediction 142 169 - -
Lac4g1427 293 CDD Bbox1_BBX-like 57 100 IPR049808 -
Lac4g1427 293 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Lac4g1427 293 Gene3D Classic Zinc Finger 1 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1427 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0172 Lac-Chr2:1303501 Lac4g1427 Lac-Chr4:32701744 8.90E-45 dispersed
Lac4g1427 Lac-Chr4:32701744 Lac5g2421 Lac-Chr5:42833531 7.80E-30 dispersed
Lac1g2401 Lac-Chr1:45428780 Lac4g1427 Lac-Chr4:32701744 3.10E-28 transposed
Lac4g1427 Lac-Chr4:32701744 Lac6g0470 Lac-Chr6:3872291 2.20E-48 wgd
Lac4g1427 Lac-Chr4:32701744 Lac9g1735 Lac-Chr9:36988123 1.10E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0573 . 1 339 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.2e-83 307.8
Lac3g0282 . 5 374 C2C2-CO-like Transcription Factor Family AT5G57660 51.1 8.2e-66 248.4
Lac9g1940 . 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 50.6 3.1e-92 336.3
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.6 2.0e-86 317.0
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac12g0415 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 1.6e-83 307.4
Lac4g1427 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.1 3.7e-52 203.0
Lac9g1735 . 15 216 C2C2-CO-like Transcription Factor Family AT1G75540 51.6 3.0e-46 183.3
Lac5g2128 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.6 6.4e-56 214.5
Lac1g2983 . 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 70.5 9.0e-50 194.1
Lac9g1749 . 1 197 C2C2-CO-like Transcription Factor Family AT2G21320 51.3 6.4e-48 188.0
Lac5g2128 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 9.5e-58 220.7
Lac9g1749 . 1 196 C2C2-CO-like Transcription Factor Family AT4G38960 55.1 1.3e-51 200.3
Lac1g2983 . 1 164 C2C2-CO-like Transcription Factor Family AT4G38960 59.8 6.2e-49 191.4
Lac4g1427 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 59.1 5.8e-55 211.8
Lac6g0470 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 52.7 2.0e-47 186.8
Lac9g1735 . 15 209 C2C2-CO-like Transcription Factor Family AT4G39070 54.2 1.8e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23692 PF00643 zf-B_box 6.50E-07 No_clan Lac TF