Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1440 ATGGGCGATACCCGAGGAGGTTGCTGTCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTTCAGCTCATCATTCCCATAGAGTCTGCGCATCGCACTATCTCCTACCTCGGTGATCTCGGCCTTCTCCAGTTCAAAGATCTCAATGCTGAGAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGCATTTTTTCAAGGAGCAGATGTTGAAGGCTGGACTGTCGAGCAAAAGCTCCATGTCACAAGTTGATATCAATATAGACGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCTGAACTGGTTGAAATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCAGTACAGCGCAAAGCAGTGCCCTAGAGCAGCAAAGAGAATTTGAATCACGGCGAGTTGGTGGAGATTCGATAGAAGTTCCATTGTTATTGGAACAAGAACCATCTGTGGATCAGTCCAAGCCGGTTAATTTGGGTTTTCTCTCTGGCCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGAATACTATTTCGCGCTACCCGGGGTAATGTTTACCTGAAGCAGGCTGCAGTTGAGGATCCTGTTGCAGATCCTATTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGCATTTGTGCAAATCGTTACCTTTACTGAGACTGGGAAAAGCTCAAATGATGCTGAAAGATCATTGTATTTCTTATGTTTCATCTTCACCATCTCCTGCTAGCTTGAAAAGCTTAATAGAATGGAAGGGAGCGGCTGTTAGTGAGCTTTGGGAGGAAAGCACAACCAACTGCAACCTAGTTTTGAGGGAGAGGGAGAGGAGTTTAAGCGTTTCTGGAAGACTGTCTGAGCTGAAGACTACAATTGATATAGGGCTGATGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATATCCTGATTCAAGATGCACTCCAGCGAGCAGCATCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCACCACCTACTTATTTTAAGACAAACAAATTCTCCACTGCTTTTCAAGAAATTGTCGATGCGTATGGGGTGGCAAGGTATCAAGAAGCGAATCCTGGTGTATACACCATTGTCACTTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACGATGTATTTTATATTACGGGAAAAGAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCGATATACACAGGTCTGATTTATAATGAGTTCTTCTCAGTCCCATTTGGACTGTTTGGTCGCTCAGCATATGAATGTCGTAGTCCTGATTGCAGTGATTCTACTACTGTGGGGTTGATAAAGGTGGGTTCTACATATCCATTTGGCTTGGATCCTGTATGGCATGGTACTCGAAGTGAGCTTCCATTTCTAAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATCATAATAAGCTATTTCAATGCTACATTTTTCCGGAACAGCATCAATATCTGGTTCCAGTTCCTGCCACAGATGATATTTCTGAACAGCCTTTTCGGTTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGCTCAAATGCTGATCTGTACCACGTAATGATATACATGTTTCTGGGCCCCACCGATGATCTAGCTGAAAATCAGCTTTTTCCTGGACAGAAAAATGTTCAGATTGTGCTTCTCTTACTGGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTTCAAGGCCAGTCTTATGCGCCACTTCCAAGTGCTGATGATTCCCTTGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTCGTGCATCAACTTATACATACCATCGAATTTGTGCTTGGAGCAGTATCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCAGAGTTGTCAAGCGTGTTTTACGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTGTAATCTTAATAGTTGGCATTATCGTTTTCATTTTCGCTACCGTTGGTGTGTTGCTATTGATGGAGACCCTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCGTTGCTCAATGAAGATGATGAGTAA 2490 43.05 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKSSMSQVDINIDDLEVKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSTAQSSALEQQREFESRRVGGDSIEVPLLLEQEPSVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVYLKQAAVEDPVADPISGEKVEKNVFVVFYSGERAKNKILKICEHLCKSLPLLRLGKAQMMLKDHCISYVSSSPSPASLKSLIEWKGAAVSELWEESTTNCNLVLRERERSLSVSGRLSELKTTIDIGLMHRGNLLQTIGEHFENWNILIQDALQRAASDSNSQVGPIFQVLLTTEAPPTYFKTNKFSTAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATMYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSPDCSDSTTVGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTDDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIVILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLNEDDE 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32843009 32859003 + Lag0001560.1 Lac4g1440 604972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1440 829 PIRSF ATP6V0A1 10 829 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lac4g1440 829 PANTHER VACUOLAR PROTON ATPASES 365 827 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lac4g1440 829 Coils Coil 93 127 - -
Lac4g1440 829 Pfam V-type ATPase 116kDa subunit family 365 821 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac4g1440 829 Pfam V-type ATPase 116kDa subunit family 38 261 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0466 Lac-Chr6:3819683 Lac4g1440 Lac-Chr4:32843009 9.30E-93 transposed
Lac9g2546 Lac-Chr9:44116756 Lac4g1440 Lac-Chr4:32843009 4.00E-265 transposed
Lac4g1440 Lac-Chr4:32843009 Lac6g0465 Lac-Chr6:3813020 2.80E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1440 K02154 - csv:101211364 1360.9