Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1440 ATGGGCGATACCCGAGGAGGTTGCTGTCCATCCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTTCAGCTCATCATTCCCATAGAGTCTGCGCATCGCACTATCTCCTACCTCGGTGATCTCGGCCTTCTCCAGTTCAAAGATCTCAATGCTGAGAAAAGCCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGCATTTTTTCAAGGAGCAGATGTTGAAGGCTGGACTGTCGAGCAAAAGCTCCATGTCACAAGTTGATATCAATATAGACGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCTGAACTGGTTGAAATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCAGTACAGCGCAAAGCAGTGCCCTAGAGCAGCAAAGAGAATTTGAATCACGGCGAGTTGGTGGAGATTCGATAGAAGTTCCATTGTTATTGGAACAAGAACCATCTGTGGATCAGTCCAAGCCGGTTAATTTGGGTTTTCTCTCTGGCCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGAATACTATTTCGCGCTACCCGGGGTAATGTTTACCTGAAGCAGGCTGCAGTTGAGGATCCTGTTGCAGATCCTATTTCTGGAGAGAAGGTTGAGAAAAACGTGTTTGTTGTTTTCTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAGCATTTGTGCAAATCGTTACCTTTACTGAGACTGGGAAAAGCTCAAATGATGCTGAAAGATCATTGTATTTCTTATGTTTCATCTTCACCATCTCCTGCTAGCTTGAAAAGCTTAATAGAATGGAAGGGAGCGGCTGTTAGTGAGCTTTGGGAGGAAAGCACAACCAACTGCAACCTAGTTTTGAGGGAGAGGGAGAGGAGTTTAAGCGTTTCTGGAAGACTGTCTGAGCTGAAGACTACAATTGATATAGGGCTGATGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAAATTGGAATATCCTGATTCAAGATGCACTCCAGCGAGCAGCATCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCACCACCTACTTATTTTAAGACAAACAAATTCTCCACTGCTTTTCAAGAAATTGTCGATGCGTATGGGGTGGCAAGGTATCAAGAAGCGAATCCTGGTGTATACACCATTGTCACTTTCCCATTTCTATTTGCTGTTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACGATGTATTTTATATTACGGGAAAAGAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCGATATACACAGGTCTGATTTATAATGAGTTCTTCTCAGTCCCATTTGGACTGTTTGGTCGCTCAGCATATGAATGTCGTAGTCCTGATTGCAGTGATTCTACTACTGTGGGGTTGATAAAGGTGGGTTCTACATATCCATTTGGCTTGGATCCTGTATGGCATGGTACTCGAAGTGAGCTTCCATTTCTAAACTCTCTGAAAATGAAAATGTCGATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATCATAATAAGCTATTTCAATGCTACATTTTTCCGGAACAGCATCAATATCTGGTTCCAGTTCCTGCCACAGATGATATTTCTGAACAGCCTTTTCGGTTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACTGGCTCAAATGCTGATCTGTACCACGTAATGATATACATGTTTCTGGGCCCCACCGATGATCTAGCTGAAAATCAGCTTTTTCCTGGACAGAAAAATGTTCAGATTGTGCTTCTCTTACTGGCCCTTGTTGCTGTGCCATGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAAACAGCACGAACAGAGGTTTCAAGGCCAGTCTTATGCGCCACTTCCAAGTGCTGATGATTCCCTTGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTCGAGTTCAGTGAGGTTTTCGTGCATCAACTTATACATACCATCGAATTTGTGCTTGGAGCAGTATCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCAGAGTTGTCAAGCGTGTTTTACGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTGTAATCTTAATAGTTGGCATTATCGTTTTCATTTTCGCTACCGTTGGTGTGTTGCTATTGATGGAGACCCTAAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTTGCGTTGCTCAATGAAGATGATGAGTAA 2490 43.05 MGDTRGGCCPSMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNAEKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKSSMSQVDINIDDLEVKLGELEAELVEINANSEKLQRSYNELVEYKLVLQKAGEFFSTAQSSALEQQREFESRRVGGDSIEVPLLLEQEPSVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVYLKQAAVEDPVADPISGEKVEKNVFVVFYSGERAKNKILKICEHLCKSLPLLRLGKAQMMLKDHCISYVSSSPSPASLKSLIEWKGAAVSELWEESTTNCNLVLRERERSLSVSGRLSELKTTIDIGLMHRGNLLQTIGEHFENWNILIQDALQRAASDSNSQVGPIFQVLLTTEAPPTYFKTNKFSTAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATMYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSPDCSDSTTVGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTDDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKKQHEQRFQGQSYAPLPSADDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIVILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLNEDDE 829
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 32843009 32859003 + Lag0001560.1 Lac4g1440 604972

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1440 829 PIRSF ATP6V0A1 10 829 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
Lac4g1440 829 PANTHER VACUOLAR PROTON ATPASES 365 827 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Lac4g1440 829 Coils Coil 93 127 - -
Lac4g1440 829 Pfam V-type ATPase 116kDa subunit family 365 821 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lac4g1440 829 Pfam V-type ATPase 116kDa subunit family 38 261 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1440 K02154 - - csv:101211364 1360.9
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0466 Lac-Chr6:3819683 Lac4g1440 Lac-Chr4:32843009 9.30E-93 transposed
Lac9g2546 Lac-Chr9:44116756 Lac4g1440 Lac-Chr4:32843009 4.00E-265 transposed
Lac4g1440 Lac-Chr4:32843009 Lac6g0465 Lac-Chr6:3813020 2.80E-218 wgd
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac4g1440 . 6 829 Primary Pumps ATPases(2) AT2G21410 67.8 0.0e+00 1110.5
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.4 4.7e-298 1021.1
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT2G21410 78.3 3.1e-241 832.4
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G21410 69.0 1.6e-101 368.2
Lac4g1440 . 8 829 Primary Pumps ATPases(2) AT4G39080 68.6 0.0e+00 1108.6
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.8 2.3e-297 1018.8
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT4G39080 78.1 1.7e-239 826.6
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT4G39080 70.1 3.7e-101 367.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0480 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.1e-66 249.6
Lac6g0479 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.7e-66 249.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT1G75630 78.5 5.9e-53 204.9
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac6g0480 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.8e-52 202.6
Lac6g0479 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 200.7
Lac2g0915 . 9 103 Primary Pumps ATPases(2) AT1G19910 98.9 7.3e-38 154.1
Lac2g0627 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.9e-71 266.5
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.2e-71 265.8
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0627 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 5.8e-75 278.1
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 5.0e-71 265.0
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1682.5
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac7g2667 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1328.2
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G76030 96.7 3.0e-268 921.4
Lac8g2013 . 1 376 Primary Pumps ATPases(2) AT1G12840 84.0 1.5e-182 636.3
Lac9g1002 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 3.7e-116 415.2
Lac1g2331 . 3 432 Primary Pumps ATPases(2) AT3G42050 72.4 2.7e-183 639.0
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac3g1976 . 6 488 Primary Pumps ATPases(2) AT4G38510 96.3 2.7e-269 924.9
Lac8g0070 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 2.9e-65 245.7
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 2.1e-266 915.2
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.4e-192 666.8
Lac8g0070 . 1 225 Primary Pumps ATPases(2) AT4G11150 74.8 1.1e-84 310.5
Lac4g3091 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1175.6
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G76030 96.7 3.0e-268 921.4
Lac3g1976 . 6 488 Primary Pumps ATPases(2) AT4G38510 96.3 2.7e-269 924.9
Lac3g1976 . 9 488 Primary Pumps ATPases(2) AT1G20260 96.0 2.1e-266 915.2
Lac8g2013 . 1 376 Primary Pumps ATPases(2) AT1G12840 84.0 1.5e-182 636.3
Lac9g1002 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.6 3.7e-116 415.2
Lac8g0070 . 1 225 Primary Pumps ATPases(2) AT4G11150 74.8 1.1e-84 310.5
Lac8g0070 . 1 226 Primary Pumps ATPases(2) AT3G08560 69.6 2.6e-76 282.7
Lac8g0070 . 1 176 Primary Pumps ATPases(2) AT1G64200 76.5 2.9e-65 245.7
Lac1g2331 . 3 432 Primary Pumps ATPases(2) AT3G42050 72.4 2.7e-183 639.0
Lac9g2546 . 1 814 Primary Pumps ATPases(2) AT2G28520 80.9 0.0e+00 1338.9
Lac4g1440 . 10 824 Primary Pumps ATPases(2) AT2G28520 56.3 9.2e-262 900.6
Lac6g0465 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.9 4.9e-215 745.3
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G28520 52.2 7.4e-70 263.1
Lac4g1440 . 6 829 Primary Pumps ATPases(2) AT2G21410 67.8 0.0e+00 1110.5
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.4 4.7e-298 1021.1
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT2G21410 78.3 3.1e-241 832.4
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT2G21410 69.0 1.6e-101 368.2
Lac4g1440 . 8 829 Primary Pumps ATPases(2) AT4G39080 68.6 0.0e+00 1108.6
Lac9g2546 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.8 2.3e-297 1018.8
Lac6g0465 . 9 524 Primary Pumps ATPases(2) AT4G39080 78.1 1.7e-239 826.6
Lac6g0466 . 1 271 Primary Pumps ATPases(2) AT4G39080 70.1 3.7e-101 367.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G34720 99.3 2.1e-60 229.2
Lac6g0480 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.8e-52 202.6
Lac6g0479 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 6.8e-52 200.7
Lac2g0915 . 9 103 Primary Pumps ATPases(2) AT1G19910 98.9 7.3e-38 154.1
Lac6g0480 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0479 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT4G38920 99.3 5.9e-60 227.6
Lac6g0480 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.1e-66 249.6
Lac6g0479 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 2.7e-66 249.2
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT1G75630 78.5 5.9e-53 204.9
Lac6g0480 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 6.5e-74 274.2
Lac6g0479 . 3 165 Primary Pumps ATPases(2) AT2G16510 98.8 2.5e-73 272.3
Lac2g0915 . 9 146 Primary Pumps ATPases(2) AT2G16510 99.3 7.0e-60 227.6
Lac2g0627 . 1 180 Primary Pumps ATPases(2) AT4G32530 76.2 5.8e-75 278.1
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT4G32530 72.9 5.0e-71 265.0
Lac2g0627 . 4 180 Primary Pumps ATPases(2) AT2G25610 83.6 1.9e-71 266.5
Lac6g0682 . 1 180 Primary Pumps ATPases(2) AT2G25610 85.6 3.2e-71 265.8
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 8.1e-199 690.3
Lac8g0547 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 9.4e-192 666.8
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07810 81.2 0.0e+00 1684.8
Lac7g2667 . 22 1046 Primary Pumps ATPases(2) AT4G00900 66.0 0.0e+00 1328.2
Lac6g0237 . 47 1042 Primary Pumps ATPases(2) AT1G10130 83.5 0.0e+00 1632.5
Lac7g2667 . 1 1065 Primary Pumps ATPases(2) AT1G07670 81.0 0.0e+00 1682.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115