Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1456 ATGATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACACTGCCGGGAACTGTCCTGATACTCTCACTGTTCTTGAGAGGCAGAGGGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGCAGCAGCAGCCAATGAATCAGAGCTGTTTCGATAGGGTGGATTACGGTGGATTTCCGTCGCCGGTGGCTGTTCCGGCGGATCATCTCACCGGGTTTCCGGGGTTCGTGTGTGCCGGCGGCGGCGGCGTTGTTGGTGGTGGTGGGTCGTCGTCACTTGTTGAGATGGTAATGGGGGCGGTGAAGCCTGACCCTGGGTTGGAAGATGGGTGGTCTGAAATGGGCAAGTTTGATCCTTCTCTGTTGTTGAATGCCAATGCTTTTGAGCTAAACTCTTCTCTCTCTAGAACCTCTAGCTGCCCGCCGGCAGTGGCTCCGGCGGTGGTGGAGAAGATGGCCTCTGCGGCCGGAAGAGAGAGCTTCAAGAAAAGAAAACCTGAGAAAGTGACTGTGGAGGAAGATAACAACAACAACAACAGAGAGAAGAGGATCAAAGCAAGTGCAGACGAAGGGGAATTATCCAAAACCACAGATCAAAACAGCACCAAAAACAACCACTCAACCACCACAACCACAACAAACAACAACAGAGAAACTTCAGCCGATACCTCAAAAGAAAACTCCAAAGCTTCTGAGGTTCAAAAGCCTGATTACATCCATGTCAGAGCACGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTCGAGTTCTTGTCCATGAAGTTGGCTGCAGTCAATCCAAGGTTCGACTTCAATGTCGAAGATCTCTTCACCAAAGAGGTATTTCCCCCTCCTTGCACCACCGCAAACTTCCCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCTTCATCCTACTTACAATTCAATCCAAACAACCAACAAATGGTATCGTGTTGTGGATTAGAAATGGGAATCAATACCTCCGATGTGGTTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAGAATTTCCTCGATTCATCCTGCCTCACCCAATTCCAAGGCTCTTCAGGGTGGGACGTGGATTTGCAGAATCTTTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCCTTTTCATCTCATCCATATACAGGTTCAATTGAAGGAAGCAATATAAGGATGGAAATGTGA 1347 47.88 MMNRALPEMLHCLNTAGNCPDTLTVLERQRARLKWQQDQLLQQQPMNQSCFDRVDYGGFPSPVAVPADHLTGFPGFVCAGGGGVVGGGGSSSLVEMVMGAVKPDPGLEDGWSEMGKFDPSLLLNANAFELNSSLSRTSSCPPAVAPAVVEKMASAAGRESFKKRKPEKVTVEEDNNNNNREKRIKASADEGELSKTTDQNSTKNNHSTTTTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRFDFNVEDLFTKEVFPPPCTTANFPAIGGMSSEMTDPSSYLQFNPNNQQMVSCCGLEMGINTSDVVLRRTISAPVSFPENFLDSSCLTQFQGSSGWDVDLQNLYNVGFDQGRSSNAFSSHPYTGSIEGSNIRMEM 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33028543 33031191 - Lag0001576.1 Lac4g1456 604988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1456 448 MobiDBLite consensus disorder prediction 156 192 - -
Lac4g1456 448 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 157 364 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac4g1456 448 Gene3D - 244 316 IPR036638 GO:0046983(InterPro)
Lac4g1456 448 MobiDBLite consensus disorder prediction 154 255 - -
Lac4g1456 448 CDD bHLH_AtBPE_like 237 322 - -
Lac4g1456 448 Coils Coil 23 43 - -
Lac4g1456 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 315 IPR036638 GO:0046983(InterPro)
Lac4g1456 448 FunFam Basic helix-loop-helix transcription factor 244 316 - -
Lac4g1456 448 Pfam Helix-loop-helix DNA-binding domain 251 298 IPR011598 GO:0046983(InterPro)
Lac4g1456 448 MobiDBLite consensus disorder prediction 193 221 - -
Lac4g1456 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 297 IPR011598 GO:0046983(InterPro)
Lac4g1456 448 SMART finulus 253 303 IPR011598 GO:0046983(InterPro)
Lac4g1456 448 MobiDBLite consensus disorder prediction 222 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1456 Lac-Chr4:33028543 Lac8g2147 Lac-Chr8:39867065 6.30E-47 dispersed
Lac10g2536 Lac-Chr10:39302056 Lac4g1456 Lac-Chr4:33028543 4.60E-35 transposed
Lac6g0062 Lac-Chr6:510509 Lac4g1456 Lac-Chr4:33028543 1.20E-33 transposed
Lac11g0170 Lac-Chr11:1577094 Lac4g1456 Lac-Chr4:33028543 5.70E-24 wgd
Lac4g1456 Lac-Chr4:33028543 Lac9g1686 Lac-Chr9:36435577 8.30E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23694 PF00010 HLH 1.30E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1456 - - - 0.0