Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1495 ATGGCGGTTTCCGGTGGCAATTCGACGGAGATTCACCCCTCCGACGACTCTTCCTCTTCTGCTGCCAACACTTCTCTATCCAACTTGAAAGTCTACGCTGCCATCGGTATAATGGTTGCATGTGTCATTGCGGCTGCTGCTCTGATCTTCCTCTGTATCCGCAGGAATCGGGACTCGAGGAAGCACAAAATGCGGGTGAAGCACAGTTCCGGATTGATTCCCTTGGTCTCCAAGGAGATCGCCGAGATCAAAGAGCCCGATCGGACTGCGGATTGCGAGAAAGGGGAAGTGGTTAGGGTTGAGAATAAGAAGGAGATTGAGTTCGAGAGTGGAGTAGGTAAGAAGAGTCAAGAGAGCGACGTGTCCGGTGGCGGCCGGAGCGACGTGTCGGTGGAGGATCAGAACTTAGGGTGGGGACGGTGGTACAGCTTGAAGGAGCTGGAAATCGCGACCGATGGGTTTCTTCAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGTGCAGAAGGAGCTCAGAGGATGCTTGTGTATGAATATGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTTGGGCCTGTTAGCCCTCTAACATGGGATATCAGGATGAAGATTGCTCTTGGAACAGCAAAAGGTTTGGCCTATTTACATGAGGGTTTAGAACCGAAAGTCGTGCACCGTGATGTAAAATCCAGCAACATTCTTTTGGATAGAAAATGGAATGCAAAAGTGTCCGACTTTGGACTTGCAAAGCTCTTACAACCTGAAGCCACCTATGTAACCACACGTGTCATGGGGACCTTTGGATATGTCTCCCCTGAGTATGCAAGTACAGGCATGCTTAACGAGGGAAGCGATGTATATAGTTTTGGTGTTCTACTTATGGAGATCATCACTGGGAGAAGCCCAATTGACTATTCCAGGCCCCCTGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCAAATCGATGTGGCGAAGAGGTTGTAGATCCATTGATCGAGATTCCGCCCTCTCCAAGAGCTTTAAAGCGAGTGTTGCTCGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAGATTGTTCATATGCTAGAAGCAGATGACTTTCCTTATCGTTCGGAGCTTCGATCCGTGCGAGAGAAAGATAACCAGCCCTCGCGCTTAGACGTTCCCAACAAACTTCCATTGAAGCATGCTGGTATAGATGACATGGAATCAAGAAAGAGATAA 1413 48.69 MAVSGGNSTEIHPSDDSSSSAANTSLSNLKVYAAIGIMVACVIAAAALIFLCIRRNRDSRKHKMRVKHSSGLIPLVSKEIAEIKEPDRTADCEKGEVVRVENKKEIEFESGVGKKSQESDVSGGGRSDVSVEDQNLGWGRWYSLKELEIATDGFLQENVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCAEGAQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRCGEEVVDPLIEIPPSPRALKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNQPSRLDVPNKLPLKHAGIDDMESRKR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33581982 33585179 + Lag0001615.1 Lac4g1495 605027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1495 470 SMART serkin_6 154 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1495 470 MobiDBLite consensus disorder prediction 109 128 - -
Lac4g1495 470 MobiDBLite consensus disorder prediction 438 470 - -
Lac4g1495 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Lac4g1495 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
Lac4g1495 470 Pfam Protein tyrosine and serine/threonine kinase 157 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1495 470 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Lac4g1495 470 MobiDBLite consensus disorder prediction 1 21 - -
Lac4g1495 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1495 470 PANTHER OS01G0323000 PROTEIN 21 445 IPR052232 -
Lac4g1495 470 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Lac4g1495 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1495 470 Gene3D Phosphorylase Kinase; domain 1 125 229 - -
Lac4g1495 470 CDD STKc_IRAK 160 426 - -
Lac4g1495 470 SUPERFAMILY Protein kinase-like (PK-like) 132 426 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1495 Lac-Chr4:33581982 Lac7g0210 Lac-Chr7:1667519 5.50E-142 dispersed
Lac1g3362 Lac-Chr1:53242068 Lac4g1495 Lac-Chr4:33581982 2.00E-40 transposed
Lac4g1495 Lac-Chr4:33581982 Lac9g1665 Lac-Chr9:36012322 1.20E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86127 PF00069 Pkinase 1.60E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1495 - - - 0.0