Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1624 ATGGTCGAATCGAACCTCACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTTAATCTCAACAAGCTTGCCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGTCAGCAACTCGATATCTCGTCATTCAGTGTGAGAAGGTCCAGCCGTTTTGCGGATAAGCCCCCTCCGAACTATAAGGAGGTGCCCATTGAACCACTTCCAGGTGTCAGAAGGACTTATCAACGGAGAGATCTGTTGAGTCGAGTTTATGCCTCACACGAAGAAAGACAATATGCTATTGACAGAGCACGAGACCTTCAATCTGGTCTAGAATCTAGATACCCAAGTTTTGTGAAGCCCATGCTTCAGTCACATGTTACCGGGGGATTTTGGCTGGGTCTTCCAGTTCACTTCTGCAAGACACACCTTCCCCATGAGGATGAAATGGTTACCTTGGTGGACGAAGATGAAAATGAGTTCCAAACAAAATACCTTGCCGAGAAGACGGGTCTTAGCGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCATTTAACTAAGCCAACTGAATTCAAGGTATACATCATCAGGGCATACAATCTAGAAGACAAAGAAGATACCAATGACATTGAGGATTCCGATGTCACCCAATTGGAAAAGAGTGGCAAAAAAACTACTAGATCAGCAAGTAAAGCAGGGCGTAAAATCAAGGCAAATAATTCTGAAGATAAAGCAGATAAAGGCGAGAATGCCGATGTCTCCCAATTGGAAAAAAGTGGCAAAAGAACCACTAGATCAGCAAGTAAAGGATATATGAATGAAATGTCCCCTGTATTGATGATCTGGAGCAACATCTCTCTCTTTCTCTTTGATGAGTTCTGGATGGCTGAGTTTCTGGAAATCATGCCAAAAAGTTGCAGGAAAACCTTAGGCTCTATTTAA 1002 44.21 MVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPTKQLKRPRQQLDISSFSVRRSSRFADKPPPNYKEVPIEPLPGVRRTYQRRDLLSRVYASHEERQYAIDRARDLQSGLESRYPSFVKPMLQSHVTGGFWLGLPVHFCKTHLPHEDEMVTLVDEDENEFQTKYLAEKTGLSGGWRGFSIDHQLVDGDALVFHLTKPTEFKVYIIRAYNLEDKEDTNDIEDSDVTQLEKSGKKTTRSASKAGRKIKANNSEDKADKGENADVSQLEKSGKRTTRSASKGYMNEMSPVLMIWSNISLFLFDEFWMAEFLEIMPKSCRKTLGSI 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34943462 34946222 + Lag0001744.1 Lac4g1624 605156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1624 333 Coils Coil 6 33 - -
Lac4g1624 333 MobiDBLite consensus disorder prediction 231 246 - -
Lac4g1624 333 MobiDBLite consensus disorder prediction 256 284 - -
Lac4g1624 333 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677(InterPro)
Lac4g1624 333 MobiDBLite consensus disorder prediction 231 288 - -
Lac4g1624 333 SMART B3_2 128 219 IPR003340 GO:0003677(InterPro)
Lac4g1624 333 CDD B3_DNA 126 217 IPR003340 GO:0003677(InterPro)
Lac4g1624 333 MobiDBLite consensus disorder prediction 32 65 - -
Lac4g1624 333 Gene3D - 102 220 IPR015300 -
Lac4g1624 333 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677(InterPro)
Lac4g1624 333 SUPERFAMILY DNA-binding pseudobarrel domain 122 218 IPR015300 -
Lac4g1624 333 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 222 IPR044837 -
Lac4g1624 333 MobiDBLite consensus disorder prediction 30 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1624 Lac-Chr4:34943462 Lac6g0337 Lac-Chr6:2825650 1.80E-59 dispersed
Lac4g1624 Lac-Chr4:34943462 Lac5g2540 Lac-Chr5:43938573 1.20E-34 wgd
Lac4g1624 Lac-Chr4:34943462 Lac6g0336 Lac-Chr6:2819040 5.70E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23700 PF02362 B3 1.80E-15 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1624 - - - 0.0