Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1628 ATGGTCACCGCCTCCGACCGCCTCCACCCCTTCCGCCGCATCACCGAGGAGCAGGAGCTCTCCGTCATCGTCGACGCTCTCACCCAAGTCGTCTCCGGCGCCTCCGACGCTGGCCTCCAGTTCCAACACGACCGTTTCCTCCGCCTCCTTCTCCCTTCCGCTAATGACGCCGCCGCCGTCTTCCCGCCTTCTTCTGATTTCGACACGTGTCACGTCTGTAGAATCAGCGGCTGCTTGGGATGCAACTTCTTCTCCGCTCCCTCCTCCCACCAACAACCCACCACCGCCAACAGCAACAACTCCGGCCGCCGTGTCCGGCGACAGAAGAAGAATTACAGAGGCGTCCGGCAACGCCCATGGGGAAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCCGCCCGGGTCTGGCTTGGCACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGACGCCGCCGCCATTAAATTCCGCGGCCCACGTGCCAGACTCAATTTCCCCTCCCCTGACACTTCCTTAATGACATTCAATTACTCCCCGCCGGCTTCCTCCACCGCCACCGCCGCCACTTCTACTCTCTTCCAAAACGAAGCAACAGTGGCTCCAAGAACTTCGTCGTCAACGAAAATGGAGATTATTCAAAACGACGTCGTATTCCCAGAAATGCTCGACGAGGACGACGACCTTCAAACACTGATCATGGATTTTGCCGGTCAATCCCGGAGCTGGTAA 735 59.86 MVTASDRLHPFRRITEEQELSVIVDALTQVVSGASDAGLQFQHDRFLRLLLPSANDAAAVFPPSSDFDTCHVCRISGCLGCNFFSAPSSHQQPTTANSNNSGRRVRRQKKNYRGVRQRPWGKWAAEIRDPKRAARVWLGTFNTAEDAARAYDAAAIKFRGPRARLNFPSPDTSLMTFNYSPPASSTATAATSTLFQNEATVAPRTSSSTKMEIIQNDVVFPEMLDEDDDLQTLIMDFAGQSRSW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34970196 34970930 - Lag0001748.1 Lac4g1628 605160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1628 244 SMART rav1_2 111 174 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677(InterPro)
Lac4g1628 244 MobiDBLite consensus disorder prediction 87 113 - -
Lac4g1628 244 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 MobiDBLite consensus disorder prediction 87 102 - -
Lac4g1628 244 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 FunFam Ethylene-responsive transcription factor 2 110 169 - -
Lac4g1628 244 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 CDD AP2 110 168 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 Pfam AP2 domain 111 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac4g1628 244 PANTHER DNA-BINDING DOMAIN 88 194 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2561 Lac-Chr1:46965413 Lac4g1628 Lac-Chr4:34970196 2.30E-34 dispersed
Lac4g1628 Lac-Chr4:34970196 Lac8g1669 Lac-Chr8:34799204 2.40E-24 dispersed
Lac4g1628 Lac-Chr4:34970196 Lac5g2544 Lac-Chr5:43994781 7.70E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23701 PF00847 AP2 2.90E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1628 - - - 0.0