Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g1633 | ATGGGCTTGCCATGGATTGGAGAAACTTTGCAACTCTATTCTCAAGACCCCAACCTATTTTTCTCAGAAAAACAGAGAAGATATGGAGAAATTTTTAAGACCAATATTTTGGGATGTCCTTGTGTGATGTTGGCCAGCGCCGCCGCCGCCCGGTTCGTTCTGGTGACCAACGCCCATTTATTCCGGCCGACTTACCCCAAAAGCAAAGAGACGATGATCGGCCCGGCGGCGCTTTTCTTCCACCAGGGAAATTACCATTCTAACCTCCGCAAGCTTGTCCAAAATTCTCTCTCTCTTGAACGCCTCAGAAACCTTGTTCCTCTCATCGAAGCCGCCGCCATTTCCGCCGCCCATTCTTGGGCCGCCGCCGCCCACGTCATCAACACCTTCCATGAAATGAAAAAGTTTTCTTTCGAGGTGGGAATCGTAGCGGTGTTTGGGAAGCTAGAAAGCCACTACAGCGAGAAGCTGAAAGAAAACTACTGCATATTAGACAAGGGTTACAACTCATTTCCAACCAGATTACCAAGAACAGCATATTCAAAAGCATTATCAGCGAGGAAGAAGCTGAGGGAGATTCTGGGAGAGATAATATTGGAGAGGAGAGAAAAAAGAGTAACAGAGAGAGATTTAGTGGGTCATCTTTTGAACTTCAGAGATGAAAATGGCGAAGCTTTGAGTGAAGATCAGATTGCCGACAACATCATCGGAGTTCTCTTTGCGGCTCAGGACACCACTGCCAGTGTGCTGACCTGGATTCTCAAGTATCTTCATGACAATTTCAAGCTCTTTCAGACTGTCAAGGCAGAGCAGATGGAGATTTATAGAAGAAATGGAGAGGGGAAGATGCCTCTGTCTTGGGCTCAGATTAAGGACATGCCCTTCACTCATAGGGTTGTATTAGAGAGTTTGAGGATGGCTAGCATCATATCCTTCACTTTTAGGGAGGCAGTGGTTGATGTGGAATATAAAGGGTACCTAATACCAAAGGGTTGGAAGGTGATGCCCTTGTTCAGGAATATTCATCACAACCCTGACTACTTCTCTGATCCTCAAATCTTTGATCCCTCTAGATTTGAGGTGGCTCCAAGACCCAATACATTCATGCCATTTGGCAATGGAGTACACTCTTGCCCTGGAAATGAACTTGCCAAGCTGGAGATCCTCATCTTACTCCATCACCTCATTACCAAATTTAGGTGGGAAGTTGTGGGATCACAAAGCGGGGTTCAATATGGGCCATTCCCAGTGCCTGTCAACGGGCTACCGGCTAGATTTTTCAAACAAACAACAACCAACCAATAG | 1305 | 46.28 | MGLPWIGETLQLYSQDPNLFFSEKQRRYGEIFKTNILGCPCVMLASAAAARFVLVTNAHLFRPTYPKSKETMIGPAALFFHQGNYHSNLRKLVQNSLSLERLRNLVPLIEAAAISAAHSWAAAAHVINTFHEMKKFSFEVGIVAVFGKLESHYSEKLKENYCILDKGYNSFPTRLPRTAYSKALSARKKLREILGEIILERREKRVTERDLVGHLLNFRDENGEALSEDQIADNIIGVLFAAQDTTASVLTWILKYLHDNFKLFQTVKAEQMEIYRRNGEGKMPLSWAQIKDMPFTHRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNPDYFSDPQIFDPSRFEVAPRPNTFMPFGNGVHSCPGNELAKLEILILLHHLITKFRWEVVGSQSGVQYGPFPVPVNGLPARFFKQTTTNQ | 434 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35006530 | 35009383 | - | Lag0001753.1 | Lac4g1633 | 605165 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g1633 | 434 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 371 | 380 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac4g1633 | 434 | PRINTS | P450 superfamily signature | 378 | 389 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | P450 superfamily signature | 369 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | P450 superfamily signature | 241 | 258 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | P450 superfamily signature | 298 | 309 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | SUPERFAMILY | Cytochrome P450 | 2 | 427 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | FunFam | Abscisic acid 8 | 1 | 428 | - | - | |
| Lac4g1633 | 434 | Gene3D | Cytochrome P450 | 1 | 428 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 368 | 378 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 297 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 25 | 44 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 337 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 378 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | PRINTS | E-class P450 group I signature | 230 | 247 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | Pfam | Cytochrome P450 | 3 | 404 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac4g1633 | 434 | CDD | CYP90-like | 25 | 425 | - | - | |
| Lac4g1633 | 434 | PANTHER | CYTOCHROME P450 26 | 1 | 407 | - | GO:0004497(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac2g0312 | Lac-Chr2:2326752 | Lac4g1633 | Lac-Chr4:35006530 | 2.00E-184 | dispersed | |
| Lac4g1633 | Lac-Chr4:35006530 | Lac5g2295 | Lac-Chr5:41621638 | 8.00E-148 | dispersed | |
| Lac4g1633 | Lac-Chr4:35006530 | Lac6g0318 | Lac-Chr6:2614235 | 2.90E-174 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g1633 | K09843 | - | csv:101219389 | 783.097 |