Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g1636 | ATGGCCGGTTCAAACCGGCCCGTCGTGTTTCTATATAATAGTCCTCCATTTCACCTTCTCACCGCAAAATACCCAGAGAAGTCACCGGAGCTCCACCGGGAAAAGAAAAAAAAGGTAAAAATCCAAGAGAAAGTTCAACAGTCTCCGGCAATGGCCTCCACTACCAACGGACAAGAAGATCAGAACCAAGCCGGAAGGCACCAGGAAGTCGGCCACAAGAGCCTCTTGCAGAGCGATGCTCTGTATCAGTACATTCTCGAGACGAGCGTTTATCCGAGAGAGCCTGAATCGATGAAGGAATTAAGAGAATTGACTGCCAAACATCCATGGAACATCATGACGACATCGGCCGATGAAGGACAGTTCTTAAACATGCTTTTGAAGCTAATTAATGCGAAGAACACGATGGAGATTGGAGTTTACACTGGCTATTCTCTTCTCGCTACTGCCCTAGCTCTTCCTGAAGACGGAAAGATTCTGGCTATGGATATTAACAGAGAAAATTACGAGCTCGGTTTGCCGGTGATTGAGAAAGCCGGCGTTGCTCACAAGATCGAGTTCAAGGAAGGCCCTGCTCTCCCTGTTCTTGACGACATGGTTGCCGATAAAAAGAATCATGGAAGCTATGACTTCATCTTCGTGGATGCCGATAAAGACAACTACATCAATTACCACAAGAGGTTGATTGATCTCGTCAAAGTTGGTGGAGTGATCGGATATGACAACACGCTATGGAATGGTTCGGTGGTGGCTCCACCTGACGCGCCGATGCGTAAATACGTCAGGTATTACAGGGACTTCGTGATAGAGCTCAACAAGACTCTGGCGGCCGACCCTAGAATTGAGATTTGTATGCTCCCAGTTGGCGATGGAATCACTCTCTGTCGTCGGGTTAACTGA | 900 | 47.67 | MAGSNRPVVFLYNSPPFHLLTAKYPEKSPELHREKKKKVKIQEKVQQSPAMASTTNGQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIEKAGVAHKIEFKEGPALPVLDDMVADKKNHGSYDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVIELNKTLAADPRIEICMLPVGDGITLCRRVN | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 35063214 | 35065057 | - | Lag0001756.1 | Lac4g1636 | 605168 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g1636 | 299 | MobiDBLite | consensus disorder prediction | 46 | 64 | - | - | |
| Lac4g1636 | 299 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 74 | 298 | IPR002935 | GO:0008171(InterPro) | |
| Lac4g1636 | 299 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 78 | 297 | IPR029063 | - | |
| Lac4g1636 | 299 | FunFam | Caffeoyl-CoA O-methyltransferase 1 | 67 | 299 | - | - | |
| Lac4g1636 | 299 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
| Lac4g1636 | 299 | MobiDBLite | consensus disorder prediction | 25 | 68 | - | - | |
| Lac4g1636 | 299 | Pfam | O-methyltransferase | 87 | 298 | IPR002935 | GO:0008171(InterPro) | |
| Lac4g1636 | 299 | Gene3D | Vaccinia Virus protein VP39 | 73 | 299 | IPR029063 | - | |
| Lac4g1636 | 299 | CDD | AdoMet_MTases | 137 | 238 | - | - | |
| Lac4g1636 | 299 | PANTHER | O-METHYLTRANSFERASE-RELATED | 71 | 298 | IPR050362 | GO:0008757(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0058 | Lac-Chr13:410730 | Lac4g1636 | Lac-Chr4:35063214 | 5.00E-63 | dispersed | |
| Lac1g2581 | Lac-Chr1:47162329 | Lac4g1636 | Lac-Chr4:35063214 | 6.40E-110 | dispersed | |
| Lac4g1636 | Lac-Chr4:35063214 | Lac5g2365 | Lac-Chr5:42299511 | 4.90E-11 | dispersed | |
| Lac4g1636 | Lac-Chr4:35063214 | Lac5g2559 | Lac-Chr5:44148236 | 3.30E-132 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g1636 | K00588 | - | csv:101205648 | 504.597 |