Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1638 ATGGGTATCTTTTCGAAGCAGAAATTTTGGAGAACTGGGGCGACCCACGATGATTCGACGGGTTTAAATGGGGCTCCTGCAGCGAGCAAGAGGAAATGGACCGGTTTCATGCCTCTGTTTGTGGCGATGGTGGTCATAGCAGAGATCGCATCTCTGAGTCGGCTGGACATGGCGAAGAATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCGCCGGTTTTGCAACAAGGGACTGAAGGTGTTGGGAAAATGGGCACTGGATTGTCCACTGATGATGGAGTAATTGGTTCGGTTAGCTGCGAGGAGTGGCTGGAGAAGGAGGATGCTGTGAAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGTTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTTAATCCTGGTCAGCAACCTGATGCTGTATTGGGATCACCTCAACAAGGTAGAGTTGCTAGCGTGCTTCGATCAATGGAATCGTCACATTACTATCCAGAGAATAATATTGCTATGGCGAGACGGAAGGGTTACACTGTGGTTATGACCACTAGTCTATCATCAGATGTTCCTGTTGGATATTTTTCGTGGGCAGAATATGAGATAATGGCACCAGTGCAGCCAAAGACCGAGCCCTCCCTTGCAGCTGCCTTCATTTCGAATTGTGGTGCCCGCAACTTCCGCTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTAGTTGCCATAGGAACCGTGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACCGAAAAGTTTTTCCAATCTCTTGTTGCAGGAACTATTCCCGTGGTGGTTGGCGCTCCAAATATTCAGGAGTTCGCTCCTTCTCCTGACTCATTTTTGCATATCAAGGAATTTTCCGATGTTGAGTCGATCGCCAAGACCATGAAACACCTTGCTGAAAATCCCAAATTGTACAATCAATCGCTGAGATGGAAGTATGATGGTCCATCTGATTCTTTCAAGGCCCTTGTAGATATGGCTGCAGTACACTCATCATGTCGCCTTTGCATCCACTTGGCAACCATTATCCATGAGAAAGAAGAAAACAGTCCCGGGTTCAAGAAACGACCGTGCAAGTGCTCTCGAGGCTCCGAAACCGTGTATCATTTATACGTAAGGGAGAGAGGGATGTTTGAAGTGCAATCCATTTTCTTGAGGTCAGGGAATTTGACATTGGAGGCTTTAGAGTCAGCTGTACTCGAAAAGTTCAAATCCTTGAAACACGTACCGATTTGGAAGCAAGAACGACCCGAAAGCATACGAGGAGGAGATGAACTGAAAATATACAGAATATATCCTGTTGGGTTGACTCAAAGGCAGGCTTTATATAGCTTCAGATTCAAAGCTAATTACAGATCATGCGCCATTGTTGTAAATGTTGAGAACAGAATTGGCCTTTGTGGGCGTAATGCATATCAGATAATGGCTAGTCGATTTTAG 1569 45.57 MGIFSKQKFWRTGATHDDSTGLNGAPAASKRKWTGFMPLFVAMVVIAEIASLSRLDMAKNAAMVDSWVDLFYGSPVLQQGTEGVGKMGTGLSTDDGVIGSVSCEEWLEKEDAVKYSRDFKREPVLVSGSEKEWRTCDVGCQFGFNPGQQPDAVLGSPQQGRVASVLRSMESSHYYPENNIAMARRKGYTVVMTTSLSSDVPVGYFSWAEYEIMAPVQPKTEPSLAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIQEFAPSPDSFLHIKEFSDVESIAKTMKHLAENPKLYNQSLRWKYDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEENSPGFKKRPCKCSRGSETVYHLYVRERGMFEVQSIFLRSGNLTLEALESAVLEKFKSLKHVPIWKQERPESIRGGDELKIYRIYPVGLTQRQALYSFRFKANYRSCAIVVNVENRIGLCGRNAYQIMASRF 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35106449 35112150 - Lag0001758.1 Lac4g1638 605170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1638 522 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 87 485 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Lac4g1638 522 Gene3D - 167 361 IPR038577 -
Lac4g1638 522 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 117 389 - -
Lac4g1638 522 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 170 362 - -
Lac4g1638 522 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 223 384 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1638 K00753 - - csv:101205170 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2551 Lac-Chr5:44085010 Lac4g1638 Lac-Chr4:35106449 1.50E-145 transposed
Lac4g1638 Lac-Chr4:35106449 Lac5g2550 Lac-Chr5:44081204 3.70E-46 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac10g1679 . 100 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 5.3e-157 552.0
Lac10g0093 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 4.3e-151 532.3
Lac10g1679 . 81 565 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.1e-164 577.4
Lac10g0093 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.4 1.7e-160 563.5
Lac10g1679 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14110 54.1 6.3e-138 488.4
Lac10g0093 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.5 2.0e-131 466.8
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 2.7e-187 652.5
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT1G49710 73.7 9.2e-143 504.6
Lac8g2244 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 5.5e-167 584.7
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g1679 . 36 565 Xyloglucan Fucosyltransferase1 AT2G03220 63.9 1.8e-200 696.4
Lac10g0093 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 60.3 1.2e-185 647.1
Lac5g2338 . 80 567 Xyloglucan Fucosyltransferase1 AT2G03220 52.7 9.4e-149 524.6
Lac5g2337 . 86 573 Xyloglucan Fucosyltransferase1 AT2G03220 52.3 3.9e-147 519.2
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 54.8 2.3e-154 543.1
Lac10g0093 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.6e-145 513.1
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15370 54.0 3.4e-148 522.7
Lac10g0093 . 107 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 1.7e-139 493.8
Lac10g1679 . 92 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.4 7.8e-153 538.1
Lac10g0093 . 112 585 Xyloglucan Fucosyltransferase1 AT2G15390 51.4 2.8e-142 503.1
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT3G19280 63.4 5.2e-183 638.3
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT3G19280 75.8 1.3e-146 517.3
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g1679 . 36 565 Xyloglucan Fucosyltransferase1 AT2G03220 63.9 1.8e-200 696.4
Lac10g0093 . 60 582 Xyloglucan Fucosyltransferase1 AT2G03220 60.3 1.2e-185 647.1
Lac5g2338 . 80 567 Xyloglucan Fucosyltransferase1 AT2G03220 52.7 9.4e-149 524.6
Lac5g2337 . 86 573 Xyloglucan Fucosyltransferase1 AT2G03220 52.3 3.9e-147 519.2
Lac10g1679 . 6 565 Xyloglucan Fucosyltransferase1 AT2G03210 55.6 4.5e-183 638.6
Lac10g0093 . 118 584 Xyloglucan Fucosyltransferase1 AT2G03210 59.4 2.7e-167 586.3
Lac10g0093 . 44 555 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.6e-135 479.9
Lac10g1679 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 2.2e-129 460.3
Lac10g1679 . 92 566 Xyloglucan Fucosyltransferase1 AT2G15390 54.4 7.8e-153 538.1
Lac10g0093 . 112 585 Xyloglucan Fucosyltransferase1 AT2G15390 51.4 2.8e-142 503.1
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15370 54.0 3.4e-148 522.7
Lac10g0093 . 107 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 1.7e-139 493.8
Lac10g1679 . 100 566 Xyloglucan Fucosyltransferase1 AT1G14080 55.9 5.3e-157 552.0
Lac10g0093 . 116 585 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 4.3e-151 532.3
Lac10g1679 . 81 565 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 1.1e-164 577.4
Lac10g0093 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.4 1.7e-160 563.5
Lac10g1679 . 101 565 Xyloglucan Fucosyltransferase1 AT1G14110 54.1 6.3e-138 488.4
Lac10g0093 . 102 583 Xyloglucan Fucosyltransferase1 AT1G14110 50.5 2.0e-131 466.8
Lac10g1679 . 101 562 Xyloglucan Fucosyltransferase1 AT2G15350 54.8 2.3e-154 543.1
Lac10g0093 . 96 583 Xyloglucan Fucosyltransferase1 AT2G15350 51.1 2.6e-145 513.1
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT3G19280 63.4 5.2e-183 638.3
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT3G19280 75.8 1.3e-146 517.3
Lac4g1638 . 1 493 Xyloglucan Fucosyltransferase1 AT1G49710 65.1 2.7e-187 652.5
Lac5g2551 . 59 387 Xyloglucan Fucosyltransferase1 AT1G49710 73.7 9.2e-143 504.6
Lac8g2244 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.3 5.5e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70