Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1658 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCTGGCGCCGATCCGGCTGCCAATGGAGGGGCAAACCAGCATGTCACCACCTCCTTGTATGTTGGAGATCTTGACGTTAACGTCACCGATTCGCAGCTCTACGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTAGATGTTTTAAACTTCACTCCTTTGAATGGGAATCCTATTAGAGTTATGTATTCGCATCGAGACCCTAGCATGCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACCTGGACAAGGCAATTGATCACAAAGCATTGCACGATACATTTTCTGCATTTGGAAACATCCTATCCTGCAAGGTTGCTACAGATTCATCTGGCCAGTCTAAAGGGTTTGGTTTTGTGCAATTCGACAGTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTAAATGATAAGCAGGTGTTTGTGGGACCTTTCCTTCGTAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAATAATGTTTTTGTTAAGAATCTGTCAGAAACTACATCTGAAGAAGATTTGCAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCAAGATGCTTCGGCTTTGTGAACTTTGAGAATGCAGATGATGCTGCTAGGTCTGTTGAAGCACTTAACGGAAAGAAGGTTGATGGGAAAGAGTGGTATGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAGTTAAAAAGTCGATTTGAACAGAGCGTTAAAGAAGCCGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATAGCATTGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACTTCATGCAAGGTTATGCGAGACCCTAATGGAATAAGTAGAGGGTCTGGTTTTGTTGCATTTTCGACTCCTGAAGAGGCTGCAAGAGCTCTTGCTGAGATGAATGGAAGAATGATTGTGAGCAAGCCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCTCAAATGCAGCCGATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGACAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTGCTGGTGCCATTCAGCAAAACCAGCAGCCTGTTCCATTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCAATGCCCGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCGCCACGGGATGCTGTCCACCCTCAACCAATTCCTGTTGGGGCTTTGGCTTCTGCCCTTGCAAATGCAACTCCAGATCAGCAAAGAACGATGCTGGGAGAAAATCTATATCCACTTGTGGAGCAGCTGGAGCCTGATAATGCAGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTTGAGTCGCCTGAAGCTCTGAAAGCCAAGGTGGCCGAGGCTATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACAGGCAATGCAGCTGATCAATTGGCTTCACTATCCCTGAATGACAACATTGATTCCTAA 1944 46.19 MAQVPPQPQVPGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDSEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLSETTSEEDLQNMFGEFGPITSVVVMRDGDGKSRCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFSAFGTITSCKVMRDPNGISRGSGFVAFSTPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQNQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLNDNIDS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35272253 35275706 - Lag0001778.1 Lac4g1658 605190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1658 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 187 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 FunFam Polyadenylate-binding protein 113 196 - -
Lac4g1658 647 CDD RRM3_I_PABPs 205 284 - -
Lac4g1658 647 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723(InterPro)
Lac4g1658 647 SMART poly_2 562 625 IPR002004 GO:0003723(InterPro)
Lac4g1658 647 SUPERFAMILY PABC (PABP) domain 491 637 IPR036053 GO:0003723(InterPro)
Lac4g1658 647 Gene3D - 191 292 IPR012677 -
Lac4g1658 647 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723(InterPro)
Lac4g1658 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 CDD RRM1_I_PABPs 28 107 IPR034364 -
Lac4g1658 647 Pfam Poly-adenylate binding protein, unique domain 557 622 IPR002004 GO:0003723(InterPro)
Lac4g1658 647 FunFam Polyadenylate-binding protein 546 628 - -
Lac4g1658 647 Pfam RNA recognition motif 208 276 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 Pfam RNA recognition motif 117 184 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 Pfam RNA recognition motif 311 379 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 Pfam RNA recognition motif 29 99 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 Gene3D - 293 395 IPR012677 -
Lac4g1658 647 MobiDBLite consensus disorder prediction 1 21 - -
Lac4g1658 647 SUPERFAMILY RNA-binding domain, RBD 206 389 IPR035979 GO:0003676(InterPro)
Lac4g1658 647 FunFam Polyadenylate-binding protein 14 112 - -
Lac4g1658 647 SMART rrm1_1 28 101 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 SMART rrm1_1 207 279 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 SMART rrm1_1 116 188 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 SMART rrm1_1 310 382 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 Gene3D - 16 115 IPR012677 -
Lac4g1658 647 Gene3D - 545 629 - -
Lac4g1658 647 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723(InterPro)
Lac4g1658 647 SMART rrm2_1 310 382 IPR003954 GO:0003676(InterPro)
Lac4g1658 647 SMART rrm2_1 28 101 IPR003954 GO:0003676(InterPro)
Lac4g1658 647 SMART rrm2_1 207 279 IPR003954 GO:0003676(InterPro)
Lac4g1658 647 SMART rrm2_1 116 188 IPR003954 GO:0003676(InterPro)
Lac4g1658 647 CDD RRM2_I_PABPs 113 189 IPR045305 -
Lac4g1658 647 PANTHER RNA BINDING PROTEIN 21 207 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Lac4g1658 647 FunFam Polyadenylate-binding protein 292 397 - -
Lac4g1658 647 SUPERFAMILY RNA-binding domain, RBD 27 196 IPR035979 GO:0003676(InterPro)
Lac4g1658 647 Gene3D - 116 188 IPR012677 -
Lac4g1658 647 CDD RRM4_I_PABPs 308 386 - -
Lac4g1658 647 FunFam Polyadenylate-binding protein 197 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1658 Lac-Chr4:35272253 Lac8g2225 Lac-Chr8:40546497 1.10E-188 dispersed
Lac10g2939 Lac-Chr10:43999821 Lac4g1658 Lac-Chr4:35272253 3.70E-133 transposed
Lac12g0248 Lac-Chr12:2732794 Lac4g1658 Lac-Chr4:35272253 9.10E-08 transposed
Lac7g0093 Lac-Chr7:785093 Lac4g1658 Lac-Chr4:35272253 4.40E-17 transposed
Lac7g0433 Lac-Chr7:3330672 Lac4g1658 Lac-Chr4:35272253 9.20E-17 transposed
Lac4g1658 Lac-Chr4:35272253 Lac5g2560 Lac-Chr5:44151357 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1658 K13126 - csv:101223017 1167.53