Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1746 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTCGAATCCGTCGACGACGATTGCGATTTCTACAGCGGCGATATGGACATGGGTATGGGCTATTACAGCGATGACGACGATCCTGACGCCGAGGACTTCGTCGAGGACGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATACCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGATGACATTATGAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTACTCCGCCACTTTAATTGGAGTGTTACTAAAGTTCATGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACTAGTTGGCTTGTTGGAAGCTCCTGTTGTACATGTCCTAAATGCTAGAGAACGTACTTGTGGAATCTGTTTTGAGTGCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGTTGGGAAGGCTACATTAGTACATCAATTAACGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGATCAAGGCATGATTAATTCATTGGCCTCAAATGAAGACAGGGAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTATCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAATGCAAGCGACCAATTGAGAAAAACCAAGGATGCATGCACATGACTTGCACACCTCCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCGGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAACTCAGTGATATTCATTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTTCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAATCCGGATTAGAAAGGCTTCATCAATGCGCGGAAAAGGAACTGCTCCAGTTCCTCAATGCAGAAGGTCCATCAAAGGAATTTAATGACTTCCGCACAAAGCTGGCTGGTCTGACCAGCGTCACTCGAAATTACTTTGAGAATCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCATGGAGCGAGCAGTGGCACAACGAGCTCGAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGCCGGGGTAAGGGAATCATTAGAACCTGCAGTTCGACTAGAAGCGGTGACAATAATGCCACTCATTGGTCATGCGAACACTGTACCTTTGTGAACACTAGATCTGCTACCACATGCGAGATGTGCCATGAACGCCATTGA 1779 43.84 MDSEDDLHYSTDVESVDDDCDFYSGDMDMGMGYYSDDDDPDAEDFVEDDTDDYFESRRREQNYTILNESDIRQRQEDDIMRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKLVGLLEAPVVHVLNARERTCGICFECYPNSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPDPSCGAVVDQGMINSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGIIRTCSSTRSGDNNATHWSCEHCTFVNTRSATTCEMCHERH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36337324 36345637 + Lag0001866.1 Lac4g1746 605278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1746 592 CDD Rcat_RBR_ARI7-like 294 348 - -
Lac4g1746 592 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Lac4g1746 592 Gene3D - 562 592 - -
Lac4g1746 592 ProSiteProfiles Zinc finger RanBP2 type profile. 560 592 IPR001876 -
Lac4g1746 592 ProSitePatterns Zinc finger RanBP2-type signature. 569 588 IPR001876 -
Lac4g1746 592 Pfam IBR domain 293 333 - -
Lac4g1746 592 SUPERFAMILY RING/U-box 209 278 - -
Lac4g1746 592 CDD BRcat_RBR_ANKIB1 216 280 - -
Lac4g1746 592 ProSiteProfiles Zinc finger RING-type profile. 140 184 IPR001841 -
Lac4g1746 592 Gene3D - 267 522 - -
Lac4g1746 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Lac4g1746 592 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Lac4g1746 592 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Lac4g1746 592 MobiDBLite consensus disorder prediction 523 565 - -
Lac4g1746 592 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
Lac4g1746 592 FunFam RBR-type E3 ubiquitin transferase 272 522 - -
Lac4g1746 592 SUPERFAMILY RING/U-box 290 338 - -
Lac4g1746 592 Coils Coil 357 377 - -
Lac4g1746 592 Pfam Ariadne domain 358 519 IPR045840 -
Lac4g1746 592 SMART zf_4 567 591 IPR001876 -
Lac4g1746 592 MobiDBLite consensus disorder prediction 523 543 - -
Lac4g1746 592 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Lac4g1746 592 SUPERFAMILY Ran binding protein zinc finger-like 564 590 IPR036443 -
Lac4g1746 592 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Lac4g1746 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 396 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Lac4g1746 592 SUPERFAMILY RING/U-box 137 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1746 K11968 - - csv:101223037 1138.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1746 Lac-Chr4:36337324 Lac6g1808 Lac-Chr6:29725082 1.30E-260 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g1639 . 164 589 ARIADNE family AT4G34370 72.0 2.6e-183 639.0
Lac9g1639 . 58 542 ARIADNE family AT2G16090 77.2 2.4e-225 778.9
Lac9g1639 . 38 543 ARIADNE family AT3G27710 61.6 5.6e-183 638.3
Lac9g1639 . 44 522 ARIADNE family AT3G27720 54.7 6.1e-144 508.4
Lac6g1808 . 1 540 ARIADNE family AT1G05890 64.3 3.3e-221 765.4
Lac4g1746 . 61 535 ARIADNE family AT1G05890 73.9 5.3e-219 758.1
Lac6g1808 . 19 595 ARIADNE family AT1G65430 74.4 5.8e-263 904.0
Lac4g1746 . 16 589 ARIADNE family AT1G65430 69.7 1.9e-245 845.9
Lac6g1808 . 15 459 ARIADNE family AT2G31780 54.5 8.8e-150 527.7
Lac4g1746 . 58 454 ARIADNE family AT2G31780 58.1 9.4e-144 507.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72