Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1778 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCCAAATGCGATGTCGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAGGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACATTGACAAAGTCAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGATAAGCAGAAAGAACAACTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCCCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATGCAGACCGACAAAGTTGAGCACATCATACAAAAAGCCCAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 714 46.92 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSAFACRPTKLSTSYKKPRIEVVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36729827 36732373 - Lag0001898.1 Lac4g1778 605310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1778 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac4g1778 237 CDD Bbox1_BBX-like 56 98 IPR049808 -
Lac4g1778 237 Gene3D Classic Zinc Finger 1 126 - -
Lac4g1778 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac4g1778 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1778 Lac-Chr4:36729827 Lac5g2421 Lac-Chr5:42833531 1.10E-34 dispersed
Lac4g1778 Lac-Chr4:36729827 Lac6g0470 Lac-Chr6:3872291 2.80E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23707 PF00643 zf-B_box 5.40E-08 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1778 - - - 0.0