Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1778 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCCAAATGCGATGTCGAAGTTCATGCTGCGAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAGGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACATTGACAAAGTCAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGATAAGCAGAAAGAACAACTAGAGTTTGGAGAACTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCCCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATGCAGACCGACAAAGTTGAGCACATCATACAAAAAGCCCAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 714 46.92 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDIDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSAFACRPTKLSTSYKKPRIEVVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36729827 36732373 - Lag0001898.1 Lac4g1778 605310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1778 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 236 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Lac4g1778 237 CDD Bbox1_BBX-like 56 98 IPR049808 -
Lac4g1778 237 Gene3D Classic Zinc Finger 1 126 - -
Lac4g1778 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 CDD Bbox1_BBX-like 5 47 IPR049808 -
Lac4g1778 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Lac4g1778 237 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1778 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1778 Lac-Chr4:36729827 Lac5g2421 Lac-Chr5:42833531 1.10E-34 dispersed
Lac4g1778 Lac-Chr4:36729827 Lac6g0470 Lac-Chr6:3872291 2.80E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g0015 . 141 518 Orphan Transcription Factor Family AT5G61850 69.3 4.2e-125 445.7
Lac4g1778 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 4.0e-61 231.9
Lac5g2421 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.3e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23707 PF00643 zf-B_box 5.40E-08 No_clan Lac TF