Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1787 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCACCATCATCATCATCTTCATCATCTTCACTTCCCCAACTTAGACATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCGCCGGAGCACTCTCCATCCGCTGCTGCCGCCACCGCTGCCACCGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCTGATCAGAAAATGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGGGCCACTGAAACTGGCCTTAGTTGCTACAAAACCCTCGTCGCCGTTGCCGAAAAGAATCACTCCTTCGACTCCGCTCTGAGGTTGATCCTCAAGTTCCAAGAGGCAAGTCCGTGGACGACATTCGGGCATGTGGCATCGAACGGCGCGATTCTCGAGGCCCTCGAGGGAGAATCGAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGACGACACCCCACATCTCAAGCTCACAGTGGTGGCAACAACAACAATAGTCAAGTCTCTAATGAAAGAAATAGGCCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCCTTCGAGTTCAACCCCATAACCAGTCTCAACCACTTAACAGACCTCACAAATGAAGCCCTCAAAGTAGAGGAAGACGAAGCCATTGCCATAAATTGCATTGGAGCCTTGAGAAGAGTGAGACTCGAAGAGAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTCGAGTCTTGACGATTGTTGAGGAAGAAGCTGATTTCATGAGCTCAAAAAATGACTTCTTGAAGTGCTTTGAAGAGTGCCTTAGATTCTACACTCTCTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGGGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATGAAAGTGAAGAAGAAATGGAGAGTGAGAGAAGAGAAAGGGGAAAGCAATGGAGCAAAAGGCTGAAGGAAGCAGCTTTTTCTTCAGCTGGATTTAGTGAAGATGTGATGGATGATGTCAAGGCTTTGCTCAAGAGGTACAAACCCGGTTGGGCGTTGCTGCGTCGGGCCGCCACCGACGCCGTCGGAGAAGAAGAAGGTGGTGATGATTCAGGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGGCAACCGAGGAGAAATCGGGCTGAGAGATGGACCAAGGAGCAAAACCGGTAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCGTGCTCGGCCTCGGCCATGGGCCGAGGCCGAGCCCGTCTGGTGCCGTTAGGTCCCCACTGCTTCCATCTGCCCCGGGGTTGCCTGCTTTGACCGAAAATGCCTCTGAAACCCTAAAAATGCTAGGAGGATGA 1602 50.31 MDITFFTAKEAPTSFFNQSHDHHHHHHLHHLHFPNLDMQSSTSQSSEYSPEHSPSAAAATAATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVAVAEKNHSFDSALRLILKFQEASPWTTFGHVASNGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVATTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITSLNHLTDLTNEALKVEEDEAIAINCIGALRRVRLEERNNVISMLKSLKPRVLTIVEEEADFMSSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDESEEEMESERRERGKQWSKRLKEAAFSSAGFSEDVMDDVKALLKRYKPGWALLRRAATDAVGEEEGGDDSGGIYLTWKEEPVAILDHPDIQGADEGNRGEIGLRDGPRSKTGKWDGPRPKGSGFWPDPVLGLGHGPRPSPSGAVRSPLLPSAPGLPALTENASETLKMLGG 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36822893 36826695 - Lag0001907.1 Lac4g1787 605319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1787 533 MobiDBLite consensus disorder prediction 453 477 - -
Lac4g1787 533 MobiDBLite consensus disorder prediction 451 533 - -
Lac4g1787 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 444 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lac4g1787 533 Pfam GRAS domain family 69 445 IPR005202 -
Lac4g1787 533 ProSiteProfiles GRAS family profile. 58 451 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3230 Lac-Chr10:46391128 Lac4g1787 Lac-Chr4:36822893 1.50E-24 dispersed
Lac4g1787 Lac-Chr4:36822893 Lac9g1067 Lac-Chr9:25222187 3.20E-106 dispersed
Lac4g1787 Lac-Chr4:36822893 Lac8g1377 Lac-Chr8:30240869 1.50E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23708 PF03514 GRAS 1.10E-92 CL0063 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1787 K27743 - csv:101206730 737.258