Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac4g1792 | ATGAGGAGCATTTGTATCATTTGTTGTGGGAGTGTTAGTTTGCTAACTACCTTTGGGATTGTTGGAGGAGTTCGTTTGGTGTTAGTGGGCCGCGTAACAGTGATGAGCGAGAGCTGTTTGGAGGAGGGAGTACTTCTTCACGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATTCTTTTTGAATGGACCTGAAATTATAAGCCAATATCATGGGAAAGTATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGTTGTCTCAAAGAATTGTCGCTACATTGCTTAATCTGATGGATGGGATCAACCGAGGTGGTGGTCCACTTGTAATTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACTGATTGCTTTAGTTCTGGTAGATCCGTTATAACAGAGGAACAACATAAGCTTACCAAGGTGGAGCAGAAAGCCAATGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATTCGAGAAGTATATCAGGGGTTTGCTCAAACTTTGCGTCTTCATCATTCTCTGAACATACTTTTACATCTGAGGCTGTAACATGTGTGTCCTCGAATGAAGTGGTAGCTGATAGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGACTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGAGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCTACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAAGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCCGATAGAGTTATGAGTCAACTCCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGATTTGATCGGTTGCTGTATGTTGGGCCTCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCCGCTTTATTTGCTCTTGAGGAGAACCTTGAGGCTTCAAAAATAAATATGGAACATTTAGAGACTGCAGTTAGACACGTGAAGCCATCTGAAACTGAGCCTTATCAAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGGAGCTAACGTAAAGCTTGTGGGTAGCAATAGTATGGAGTGGGTGGCTCTAGAGTCTAGGGACGCTGGGGATATTCTCATGCTATGGGATGGGAACTTTTAA | 1917 | 42.98 | MRSICIICCGSVSLLTTFGIVGGVRLVLVGRVTVMSESCLEEGVLLHGPPGTGKTSLAQLCAHDAGVNLFFLNGPEIISQYHGKVLIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRGGGPLVIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSGRSVITEEQHKLTKVEQKANVDDMILEPVLSKDSRSISGVCSNFASSSFSEHTFTSEAVTCVSSNEVVADSEDIFNSSEIKCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICREAALFALEENLEASKINMEHLETAVRHVKPSETEPYQELSSRFQRLVCSSSQGANVKLVGSNSMEWVALESRDAGDILMLWDGNF | 638 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 36918313 | 36923217 | - | Lag0001912.1 | Lac4g1792 | 605324 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac4g1792 | 638 | Pfam | ATPase family associated with various cellular activities (AAA) | 44 | 84 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lac4g1792 | 638 | Pfam | ATPase family associated with various cellular activities (AAA) | 376 | 507 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lac4g1792 | 638 | Pfam | ATPase family associated with various cellular activities (AAA) | 85 | 154 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lac4g1792 | 638 | CDD | RecA-like_CDC48_r2-like | 347 | 506 | - | - | |
Lac4g1792 | 638 | Gene3D | - | 85 | 154 | IPR027417 | - | |
Lac4g1792 | 638 | FunFam | spermatogenesis-associated protein 5-like protein 1 | 509 | 593 | - | - | |
Lac4g1792 | 638 | Coils | Coil | 557 | 577 | - | - | |
Lac4g1792 | 638 | ProSitePatterns | AAA-protein family signature. | 478 | 496 | IPR003960 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Lac4g1792 | 638 | Gene3D | - | 155 | 285 | - | - | |
Lac4g1792 | 638 | SMART | AAA_5 | 372 | 510 | IPR003593 | GO:0016887(InterPro) | |
Lac4g1792 | 638 | SMART | AAA_5 | 40 | 157 | IPR003593 | GO:0016887(InterPro) | |
Lac4g1792 | 638 | PANTHER | AAA-FAMILY ATPASE | 85 | 596 | IPR050168 | GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER) | |
Lac4g1792 | 638 | Gene3D | - | 333 | 584 | IPR027417 | - | |
Lac4g1792 | 638 | FunFam | calmodulin-interacting protein 111 isoform X1 | 333 | 508 | - | - | |
Lac4g1792 | 638 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 42 | 230 | IPR027417 | - | |
Lac4g1792 | 638 | Gene3D | - | 31 | 84 | IPR027417 | - | |
Lac4g1792 | 638 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 334 | 590 | IPR027417 | - | |
Lac4g1792 | 638 | Gene3D | - | 509 | 579 | - | - | |
Lac4g1792 | 638 | Pfam | AAA+ lid domain | 179 | 222 | IPR041569 | - | |
Lac4g1792 | 638 | Pfam | AAA+ lid domain | 530 | 575 | IPR041569 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac4g1792 | Lac-Chr4:36918313 | Lac8g1447 | Lac-Chr8:31624482 | 1.20E-221 | dispersed | |
Lac4g1792 | Lac-Chr4:36918313 | Lac1g2159 | Lac-Chr1:42974948 | 1.30E-109 | transposed |
Pathway information
