Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1792 ATGAGGAGCATTTGTATCATTTGTTGTGGGAGTGTTAGTTTGCTAACTACCTTTGGGATTGTTGGAGGAGTTCGTTTGGTGTTAGTGGGCCGCGTAACAGTGATGAGCGAGAGCTGTTTGGAGGAGGGAGTACTTCTTCACGGTCCTCCTGGTACTGGAAAAACTTCCTTGGCTCAATTATGTGCTCATGATGCTGGTGTCAACTTATTCTTTTTGAATGGACCTGAAATTATAAGCCAATATCATGGGAAAGTATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGTTGTCTCAAAGAATTGTCGCTACATTGCTTAATCTGATGGATGGGATCAACCGAGGTGGTGGTCCACTTGTAATTGCTTCTACCAACAGGCCTGAAAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTGGATATTCTACATACAATACTAAGTGAAATGGAGCACTCTCTTTCAGACCTGCAAGTTCAACATCTATCCATGGTTACTCATGGTTTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAGTTTGTATGAGGCGTTATCACAAGTTTAAAATTTCTACTGATTGCTTTAGTTCTGGTAGATCCGTTATAACAGAGGAACAACATAAGCTTACCAAGGTGGAGCAGAAAGCCAATGTTGATGATATGATTTTAGAACCTGTTCTCTCAAAAGATTCGAGAAGTATATCAGGGGTTTGCTCAAACTTTGCGTCTTCATCATTCTCTGAACATACTTTTACATCTGAGGCTGTAACATGTGTGTCCTCGAATGAAGTGGTAGCTGATAGTGAGGATATTTTTAACTCTTCAGAAATCAAGTGTAGACTGAATGTTGTTTTTGAAGATTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGAGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAAGGGAGGTTAAGATTCAATTAATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCTACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTCATGGCACGTGCTGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGTCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAAGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCCAATGCCCCATCCATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCCGATAGAGTTATGAGTCAACTCCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTTACTGTCATTGCAGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGATTTGATCGGTTGCTGTATGTTGGGCCTCCAAATGAATCTGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGTACGAGGAAGTTGGCTTCTCTTACTCAAGGCTGTACAGGGGCTGACATATCATTAATCTGCAGAGAAGCCGCTTTATTTGCTCTTGAGGAGAACCTTGAGGCTTCAAAAATAAATATGGAACATTTAGAGACTGCAGTTAGACACGTGAAGCCATCTGAAACTGAGCCTTATCAAGAATTATCATCTAGGTTTCAAAGGCTTGTTTGTTCTAGCTCACAAGGAGCTAACGTAAAGCTTGTGGGTAGCAATAGTATGGAGTGGGTGGCTCTAGAGTCTAGGGACGCTGGGGATATTCTCATGCTATGGGATGGGAACTTTTAA 1917 42.98 MRSICIICCGSVSLLTTFGIVGGVRLVLVGRVTVMSESCLEEGVLLHGPPGTGKTSLAQLCAHDAGVNLFFLNGPEIISQYHGKVLIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRGGGPLVIASTNRPESIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSDLQVQHLSMVTHGFVGADLAALCNEAALVCMRRYHKFKISTDCFSSGRSVITEEQHKLTKVEQKANVDDMILEPVLSKDSRSISGVCSNFASSSFSEHTFTSEAVTCVSSNEVVADSEDIFNSSEIKCRLNVVFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQREVKIQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTQGCTGADISLICREAALFALEENLEASKINMEHLETAVRHVKPSETEPYQELSSRFQRLVCSSSQGANVKLVGSNSMEWVALESRDAGDILMLWDGNF 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 36918313 36923217 - Lag0001912.1 Lac4g1792 605324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1792 638 Pfam ATPase family associated with various cellular activities (AAA) 44 84 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac4g1792 638 Pfam ATPase family associated with various cellular activities (AAA) 376 507 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac4g1792 638 Pfam ATPase family associated with various cellular activities (AAA) 85 154 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac4g1792 638 CDD RecA-like_CDC48_r2-like 347 506 - -
Lac4g1792 638 Gene3D - 85 154 IPR027417 -
Lac4g1792 638 FunFam spermatogenesis-associated protein 5-like protein 1 509 593 - -
Lac4g1792 638 Coils Coil 557 577 - -
Lac4g1792 638 ProSitePatterns AAA-protein family signature. 478 496 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Lac4g1792 638 Gene3D - 155 285 - -
Lac4g1792 638 SMART AAA_5 372 510 IPR003593 GO:0016887(InterPro)
Lac4g1792 638 SMART AAA_5 40 157 IPR003593 GO:0016887(InterPro)
Lac4g1792 638 PANTHER AAA-FAMILY ATPASE 85 596 IPR050168 GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0016887(PANTHER)
Lac4g1792 638 Gene3D - 333 584 IPR027417 -
Lac4g1792 638 FunFam calmodulin-interacting protein 111 isoform X1 333 508 - -
Lac4g1792 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 230 IPR027417 -
Lac4g1792 638 Gene3D - 31 84 IPR027417 -
Lac4g1792 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 590 IPR027417 -
Lac4g1792 638 Gene3D - 509 579 - -
Lac4g1792 638 Pfam AAA+ lid domain 179 222 IPR041569 -
Lac4g1792 638 Pfam AAA+ lid domain 530 575 IPR041569 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1792 Lac-Chr4:36918313 Lac8g1447 Lac-Chr8:31624482 1.20E-221 dispersed
Lac4g1792 Lac-Chr4:36918313 Lac1g2159 Lac-Chr1:42974948 1.30E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1792 - - - 0.0