Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1823 ATGGAACAGAAAAGAAGCTCTTGCTCTGTTGATGAAAGCTATCTCATTTCTCTCACTACCAAAAGGCACAAGACTGATTTTTCAATTTCAGCTAAGGACAGGAAGGAGAAGCTGGGTGAAAGAATTGTGGCTCTGCAACAACTTGTTTCACCATATGGAAAGACAGATACTGCTTCTGTTCTTCTGGAGGCAATGGAATACATACAATTTCTTCATGAACAGATTAAGGTGTTGATTGCTCCATACCTAGAAAGAACCCCAACCTCTAGAATACAGGAGATTGAGCCATGGAGCCTGGGAAGCAATGGCTTATGTCTGGTTCCGACCGCCTCAACTTCTCAAATTGCTAGCTGCAATGGTGCAGACATCTGGGCTCCTGTCAAGACCTCTTCCTCCAGCTCTGAGAAAAGCGTTTTGCAATTACAATGA 429 43.59 MEQKRSSCSVDESYLISLTTKRHKTDFSISAKDRKEKLGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQIKVLIAPYLERTPTSRIQEIEPWSLGSNGLCLVPTASTSQIASCNGADIWAPVKTSSSSSEKSVLQLQ 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37366317 37369460 + Lag0001943.1 Lac4g1823 605355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1823 142 CDD bHLH_AtbHLH_like 28 78 IPR045239 -
Lac4g1823 142 SMART finulus 28 77 IPR011598 GO:0046983(InterPro)
Lac4g1823 142 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 84 IPR036638 GO:0046983(InterPro)
Lac4g1823 142 FunFam Transcription factor bHLH113 family 21 96 - -
Lac4g1823 142 Gene3D - 19 87 IPR036638 GO:0046983(InterPro)
Lac4g1823 142 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 71 IPR011598 GO:0046983(InterPro)
Lac4g1823 142 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 113 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1823 Lac-Chr4:37366317 Lac7g1318 Lac-Chr7:12822545 1.00E-51 dispersed
Lac4g1823 Lac-Chr4:37366317 Lac1g3264 Lac-Chr1:52487895 1.90E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1823 - - - 0.0