Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1833 ATGAGTTCATTCTTTGTTGGGTCTCACTCTTCTTCTTCAGCTGCAACTTCCACTGCCATCTCTAATCCTTCTAATGTCCCTCTGCTGTATAGATCTTTGCAGGCTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTCCAATTGAAGGAGAAGGTCATTGAGTACTGTTGCAAGATGCAGCACCAGTACTGCCAGTATATTGGATCCAAGAAAGTCAGAAAAACATGGTGGAGAAGGCTTTTGGTGGCCTGGGTTCTTGGCTTTACTCTTCTTTCTCTATGGATCTTCCACTACATGAGCTCTCAAGCTACAGAGAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAGAACCCATCTGCTATAGATCAGAGGACTTTTGCGAGGTACACAGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCGGTGAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGATAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGAGGAAGACTGTAAGAATGTAATACGTGCTAGAGCATCAGGAAAGGGAGTCTTAACTGCTCCGTTCAGGTTAATCAAAACAAATCGTCTAGGAGTCATACTTACATTTGCTGTCTACAAGAGAGAACTTCCCTCAAACGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGTGGAGTTTTTGATATCGAGTCACTGGTGGAGAAGTTACTTCAACAGCTTGCGAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACAAACCAATCGCACCCGATCAGTATGTATGGTAAAGATGTATCTGAAGATGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCAGACAGGAAGCATGAGATGCGATGCAGATTCAAGCAAAAACAACCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACCTTGAACCGAATCGCCAAGGTGGAGGATGATTATCATGAGATGATGGAACTCAAGAAACGAGCAGAAGATGCTGATGTTGCCAAATCCCAGTTCCTTGCAACCGTGTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACCGACTTAGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGATAGTGGAAAGGCTTTGGTATCACTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTCGAAGCAATACCGTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTTTCTGGGAAATCTCAAGAAAAGGGACTGGAGCTGGCAGTTTACATCTCAGATAGTGTTCCTGAGATGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTCATGGGAAACTCAATCAAGTTCACAGAGAAAGGACACATATTTGTCACTGTTAACCTCGTTGAGGAGGTTATTGAATCGATTGATCTTGAGATCGAGTCATCAAAAAATAGCACCTTGAGTGGCTATCCTGTTGCAAATAGACGCCTTAGCTGGGCCGGATTCCGTACGTTCAGTCAAGAGGGACCTACTGTTTGTCATTTCCTGCCATCTCCCGCAGACTCTATTAATCTCATGGTATCCGTGGAAGATACGGGCGTTGGTATTCCTCTAGAAGCTCAATCACGTGTTTTCACTCCCTTCATGCAGGTTCGACCATCCATCCCTAGAACCCATGAGGGAACAGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGCGAGATTGGTTTTGTGAGTGTACCGAAGGTTGGCTCTACCTTCACATTCACAGCAGTTTTCAATGGCTCTTCCAATTCAAGTGAGTATAACCAAACCCAAAAAGTTAAGAACACCTCCATCCCCGCATCCTCAGAATTTAAGGGTATGAGGGCATTAGTTGTGGACCATCGACCTATTCGGGCCAAAGTGTCAAGATATCATATTCGACGTCTTGGAATAAATGTTGAATTATTATCCGACTTGAATCAATGTCTGTCTAACACAAGATTTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAAGATCTTTGGGATCAGGATACGAGCACATCAGATCTCTTTATCAAGAACTTGAGAAATTCTTATGGGGTTCCTCCCAAACTATTTCTTCTTACCAGCTCCATTAGTTCTTCAAAAGCTAGCACTTTAATTTCTGATCTACTCACTCCGACAGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGTTGCCTCTTTACACAGAGTCATGGGTGTAGGGATCAAGGGTAATCCTCGCAACGGAGAGCTTCCTGTACTCTCTCTCCGTAATTTACTTCTTGGTCGGAAAATTCTCGTTATAGATGACAATGAGGTGAACCGTATTGTTGCTGCTGGTGCTCTAAAACGATATGGAGCTGAAGTGGTATGTGAAAACAGTGGAAGCGCTGCAATCCAACTGCTTACACCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTCAAGCTACAAGGAGTATTCGGGAAATTGAACATGGTATCAATGATGGTATTCGAGCTGGAGAACTATCAGAAGAAGCGTACGAAAATAAAAGTAATTGGCATGTACCCATCTTGGCCATGACTGCAGACGTAATCCAGGCTACTCATGAGGAATGCCTTCGGTGTGGGATGGATGGATACGTTTCAAAGCCATTTGAAGTTGAACGACTTTACCGAGAAGTTTCTCGATTTTTCCACAGTACCTCAAATGGAACTTTATAG 3096 43.7 MSSFFVGSHSSSSAATSTAISNPSNVPLLYRSLQAGLLGGGGKIWLQLKEKVIEYCCKMQHQYCQYIGSKKVRKTWWRRLLVAWVLGFTLLSLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGEEDCKNVIRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRELPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPEMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVNLVEEVIESIDLEIESSKNSTLSGYPVANRRLSWAGFRTFSQEGPTVCHFLPSPADSINLMVSVEDTGVGIPLEAQSRVFTPFMQVRPSIPRTHEGTGIGLSISKCLVGLMKGEIGFVSVPKVGSTFTFTAVFNGSSNSSEYNQTQKVKNTSIPASSEFKGMRALVVDHRPIRAKVSRYHIRRLGINVELLSDLNQCLSNTRFSGSTINMIFVEQDLWDQDTSTSDLFIKNLRNSYGVPPKLFLLTSSISSSKASTLISDLLTPTVILKPLRAGMLVASLHRVMGVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNEVNRIVAAGALKRYGAEVVCENSGSAAIQLLTPPHHFDACFMDIQMPEMDGFQATRSIREIEHGINDGIRAGELSEEAYENKSNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREVSRFFHSTSNGTL 1031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37496053 37502079 + Lag0001953.1 Lac4g1833 605365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1833 1031 SMART HKATPase_4 547 711 IPR003594 -
Lac4g1833 1031 Coils Coil 412 432 - -
Lac4g1833 1031 CDD HATPase_EvgS-ArcB-TorS-like 552 709 - -
Lac4g1833 1031 ProSiteProfiles Response regulatory domain profile. 739 860 IPR001789 GO:0000160(InterPro)
Lac4g1833 1031 PANTHER TWO-COMPONENT HISTIDINE KINASE 74 1022 IPR050956 -
Lac4g1833 1031 ProSiteProfiles CHASE domain profile. 148 374 IPR006189 -
Lac4g1833 1031 Pfam CHASE domain 151 347 IPR006189 -
Lac4g1833 1031 Gene3D - 499 713 IPR036890 -
Lac4g1833 1031 FunFam Histidine kinase 4 152 381 - -
Lac4g1833 1031 MobiDBLite consensus disorder prediction 1 20 - -
Lac4g1833 1031 Gene3D - 99 151 - -
Lac4g1833 1031 SUPERFAMILY CheY-like 884 1023 IPR011006 -
Lac4g1833 1031 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 489 706 IPR036890 -
Lac4g1833 1031 CDD REC_hyHK_CKI1_RcsC-like 887 1019 - -
Lac4g1833 1031 CDD PRTases_typeI 833 912 IPR000836 -
Lac4g1833 1031 SMART CHASE_2 148 349 IPR006189 -
Lac4g1833 1031 Pfam His Kinase A (phospho-acceptor) domain 435 500 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac4g1833 1031 ProSiteProfiles Histidine kinase domain profile. 442 711 IPR005467 -
Lac4g1833 1031 FunFam Histidine kinase 4 407 498 - -
Lac4g1833 1031 SMART HisKA_10 435 500 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac4g1833 1031 Pfam Response regulator receiver domain 887 956 IPR001789 GO:0000160(InterPro)
Lac4g1833 1031 SUPERFAMILY CheY-like 734 861 IPR011006 -
Lac4g1833 1031 PRINTS Bacterial sensor protein C-terminal signature 636 650 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac4g1833 1031 PRINTS Bacterial sensor protein C-terminal signature 654 664 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac4g1833 1031 PRINTS Bacterial sensor protein C-terminal signature 695 708 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac4g1833 1031 PRINTS Bacterial sensor protein C-terminal signature 671 689 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Lac4g1833 1031 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 420 501 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Lac4g1833 1031 Gene3D - 881 1027 - -
Lac4g1833 1031 SMART REC_2 885 1019 IPR001789 GO:0000160(InterPro)
Lac4g1833 1031 Gene3D CHASE domain 152 381 IPR042240 -
Lac4g1833 1031 Gene3D - 404 498 - -
Lac4g1833 1031 ProSiteProfiles Response regulatory domain profile. 886 1023 IPR001789 GO:0000160(InterPro)
Lac4g1833 1031 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 635 706 IPR003594 -
Lac4g1833 1031 CDD HisKA 435 496 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1833 Lac-Chr4:37496053 Lac9g1967 Lac-Chr9:39417920 6.50E-305 dispersed
Lac4g1833 Lac-Chr4:37496053 Lac12g0372 Lac-Chr12:4297308 2.5e-312 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23709 PF03924 CHASE 5.10E-37 CL0165 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1833 K14489 - csv:101216313 1806.57