Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1835 ATGATGCCTTCTTTATATCTACCAGTTTGTCATCTCTGTGCGAGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACCAGTGGTTCTTTGTTTCTTTTCAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGCGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAGCGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAATCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGACGGAAAGTGTTCCACAGGTATCTCCAGCCTCGGCTTCTACTTCCGGTTCCTATTTGTCTCAAAATCTTGCTTCAGAATATCTACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTAGCTCTAACACTGGCAACTGTACTACTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCAGAATTAAAAAGTTCAAACGAGTGTGAGGTTTCTCAAGCTTTGAAAAGGATAGAGGAACAATTGAGTTTGAATGAAGACAGCTTGAAAGACATTGATTCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTTACTTTGAGATGTCCAATGAGGATCAGTTTTCAGTACTTCAGCATTCAGAAAATGCTGCCCACGATAATGATTATACATCGTTTGAGATGCAAGATGCTAATGGAAAACATTACCATTATGCTATGGCACACGAGTCTTTATTTGGTAGTGAAGGAGCTCAACCATGCGGTGATGAATTACGTTCAAGTAAGACAACAGATCTTGAGTCTCAAGCTAGACATTCTCTCCTATGGATTGAAAATGAAAAGCCCTCTTCATCTTCGAGTAAAAGTACAACTGTAGGCAATGAACATTGCAACTGGGTGCACAGCGGAGGAAAAACTTCTCCTCTGCTTGGAAGCTGCACATCTCCAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCACCTACCACATACCATTTCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGTCAAATTGTACCTGAGCAGGGTTATGCCACTGAGAATACTAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTATTCAGAATGGGGTTCTTTGTTGTGAAGCACCTCCACACCTTCCTGGGAAGGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATACAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCGTTGCCAATCACATTCAAGTGGAGCTACGAAGAGTCCCGAGGAGCTTTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTCAAACTCCTTCTGCTACCACTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCACCTCTGGCTTTCTTCCCAACGGAAAGATGGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAGAAAATGGTTGCTGCACTAATCGCCTCTGAAGCATCAGCTGGTGCTGTGACTGATCCTTGTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCAATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGCGAGTTCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGCAAATTGCATTTCAAAGGGGAACCTCCCTTATACTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCATTCAGAAAGCGGCAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAGTACAGAGGTTGGAAGGGTCGTAGAGAGTTCTTATCAATTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGAAGTAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTTGAAGGTACTATCGACGAGGCTGTTTCACGAGTTCTATCGATGGTTGATTCTCCAGATGCTCGTCTGCAATATCACCGCATGCTTGAAGGCTTTCGAGAAGCTAAGGCTGAACTCAATGGCGCCGGTGGCGAAACTGCAGCATCAACTTCTCTCGGTGATGTTTCTGGAATGGAAGATTGTAATCAATATCCCAAGTTTGTATAG 2922 42.16 MMPSLYLPVCHLCARYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESVPQVSPASASTSGSYLSQNLASEYLQTSLSPGSVEVSSNTGNCTTGSNGMDGQYEISELKSSNECEVSQALKRIEEQLSLNEDSLKDIDSFYGHEEGSNSNLYFEMSNEDQFSVLQHSENAAHDNDYTSFEMQDANGKHYHYAMAHESLFGSEGAQPCGDELRSSKTTDLESQARHSLLWIENEKPSSSSSKSTTVGNEHCNWVHSGGKTSPLLGSCTSPEYSSPLDNHDVNSTYHIPFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIIQNGVLCCEAPPHLPGKVSFCITSGNREPCSEYREFEYKMNVCSRCQSHSSGATKSPEELLLLVRLVQLLLSDSSMQKSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSQTPSATTDWLLQELLKDKLHLWLSSQRKDGHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPCSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGEFKGSAEVEAEMTANCISKGNLPYTEDYIPLKNTLAAVRNASQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARLQYHRMLEGFREAKAELNGAGGETAASTSLGDVSGMEDCNQYPKFV 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37508664 37522285 - Lag0001955.1 Lac4g1835 605367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1835 973 SUPERFAMILY E set domains 410 493 IPR014756 -
Lac4g1835 973 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 863 IPR027417 -
Lac4g1835 973 Pfam IPT/TIG domain 410 491 IPR002909 -
Lac4g1835 973 ProSiteProfiles IQ motif profile. 835 859 - -
Lac4g1835 973 Gene3D - 812 859 - -
Lac4g1835 973 Pfam CG-1 domain 24 137 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 SMART CG_1_2 21 139 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 SMART iq_5 754 776 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 Pfam IQ calmodulin-binding motif 814 832 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Lac4g1835 973 Gene3D Immunoglobulins 404 497 IPR013783 -
Lac4g1835 973 SUPERFAMILY Ankyrin repeat 607 699 IPR036770 -
Lac4g1835 973 ProSiteProfiles CG-1 DNA-binding domain profile. 18 144 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 CDD IPT 410 494 - -
Lac4g1835 973 Pfam Ankyrin repeats (3 copies) 611 697 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 Gene3D - 512 700 IPR036770 -
Lac4g1835 973 ProSiteProfiles IQ motif profile. 755 783 - -
Lac4g1835 973 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 941 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac4g1835 973 ProSiteProfiles Ankyrin repeat region circular profile. 638 664 - -
Lac4g1835 973 SMART ANK_2a 638 667 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 ProSiteProfiles IQ motif profile. 812 841 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1835 K21596 - - csv:101222798 1634.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0922 Lac-Chr11:10037357 Lac4g1835 Lac-Chr4:37508664 2.80E-91 dispersed
Lac12g0246 Lac-Chr12:2693424 Lac4g1835 Lac-Chr4:37508664 6.80E-111 dispersed
Lac4g1835 Lac-Chr4:37508664 Lac7g1001 Lac-Chr7:8673863 7.70E-90 dispersed
Lac4g1835 Lac-Chr4:37508664 Lac5g1940 Lac-Chr5:37727040 2.70E-103 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
Lac12g0246 . 10 1093 CAMTA Transcription Factor Family AT5G64220 53.6 4.8e-271 931.8
Lac5g1941 . 3 87 CAMTA Transcription Factor Family AT5G64220 80.0 3.1e-36 151.8
Lac4g1835 . 15 944 CAMTA Transcription Factor Family AT1G67310 52.8 2.7e-255 879.4
Lac11g0922 . 34 875 CAMTA Transcription Factor Family AT3G16940 52.7 5.6e-243 838.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23710 PF03859 CG-1 2.30E-48 No_clan Lac TF