Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1835 ATGATGCCTTCTTTATATCTACCAGTTTGTCATCTCTGTGCGAGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACCAGTGGTTCTTTGTTTCTTTTCAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGCGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACATGAGCGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAATCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGACGGAAAGTGTTCCACAGGTATCTCCAGCCTCGGCTTCTACTTCCGGTTCCTATTTGTCTCAAAATCTTGCTTCAGAATATCTACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTAGCTCTAACACTGGCAACTGTACTACTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCAGAATTAAAAAGTTCAAACGAGTGTGAGGTTTCTCAAGCTTTGAAAAGGATAGAGGAACAATTGAGTTTGAATGAAGACAGCTTGAAAGACATTGATTCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTTACTTTGAGATGTCCAATGAGGATCAGTTTTCAGTACTTCAGCATTCAGAAAATGCTGCCCACGATAATGATTATACATCGTTTGAGATGCAAGATGCTAATGGAAAACATTACCATTATGCTATGGCACACGAGTCTTTATTTGGTAGTGAAGGAGCTCAACCATGCGGTGATGAATTACGTTCAAGTAAGACAACAGATCTTGAGTCTCAAGCTAGACATTCTCTCCTATGGATTGAAAATGAAAAGCCCTCTTCATCTTCGAGTAAAAGTACAACTGTAGGCAATGAACATTGCAACTGGGTGCACAGCGGAGGAAAAACTTCTCCTCTGCTTGGAAGCTGCACATCTCCAGAATATTCTTCACCACTAGACAATCATGATGTTAATTCCACCTACCACATACCATTTCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGTCAAATTGTACCTGAGCAGGGTTATGCCACTGAGAATACTAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTATTCAGAATGGGGTTCTTTGTTGTGAAGCACCTCCACACCTTCCTGGGAAGGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATACAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCGTTGCCAATCACATTCAAGTGGAGCTACGAAGAGTCCCGAGGAGCTTTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTCAAACTCCTTCTGCTACCACTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCACCTCTGGCTTTCTTCCCAACGGAAAGATGGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAGAAAATGGTTGCTGCACTAATCGCCTCTGAAGCATCAGCTGGTGCTGTGACTGATCCTTGTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCAATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGCGAGTTCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGCAAATTGCATTTCAAAGGGGAACCTCCCTTATACTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTTCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCATTCAGAAAGCGGCAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAACTTTTCTAATCGACGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAGTACAGAGGTTGGAAGGGTCGTAGAGAGTTCTTATCAATTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGTTTTCGTAGCGAAGTAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTTGAAGGTACTATCGACGAGGCTGTTTCACGAGTTCTATCGATGGTTGATTCTCCAGATGCTCGTCTGCAATATCACCGCATGCTTGAAGGCTTTCGAGAAGCTAAGGCTGAACTCAATGGCGCCGGTGGCGAAACTGCAGCATCAACTTCTCTCGGTGATGTTTCTGGAATGGAAGATTGTAATCAATATCCCAAGTTTGTATAG 2922 42.16 MMPSLYLPVCHLCARYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGTESVPQVSPASASTSGSYLSQNLASEYLQTSLSPGSVEVSSNTGNCTTGSNGMDGQYEISELKSSNECEVSQALKRIEEQLSLNEDSLKDIDSFYGHEEGSNSNLYFEMSNEDQFSVLQHSENAAHDNDYTSFEMQDANGKHYHYAMAHESLFGSEGAQPCGDELRSSKTTDLESQARHSLLWIENEKPSSSSSKSTTVGNEHCNWVHSGGKTSPLLGSCTSPEYSSPLDNHDVNSTYHIPFLKQDHGNSFEVDTSLIVAQVQKFTIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIIQNGVLCCEAPPHLPGKVSFCITSGNREPCSEYREFEYKMNVCSRCQSHSSGATKSPEELLLLVRLVQLLLSDSSMQKSDKVDSEVRSNNLKAGDDQWSSLIEALLVGSQTPSATTDWLLQELLKDKLHLWLSSQRKDGHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPCSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGEFKGSAEVEAEMTANCISKGNLPYTEDYIPLKNTLAAVRNASQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARLQYHRMLEGFREAKAELNGAGGETAASTSLGDVSGMEDCNQYPKFV 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37508664 37522285 - Lag0001955.1 Lac4g1835 605367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1835 973 SUPERFAMILY E set domains 410 493 IPR014756 -
Lac4g1835 973 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 757 863 IPR027417 -
Lac4g1835 973 Pfam IPT/TIG domain 410 491 IPR002909 -
Lac4g1835 973 ProSiteProfiles IQ motif profile. 835 859 - -
Lac4g1835 973 Gene3D - 812 859 - -
Lac4g1835 973 Pfam CG-1 domain 24 137 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 SMART CG_1_2 21 139 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 SMART iq_5 811 833 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 SMART iq_5 754 776 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 Pfam IQ calmodulin-binding motif 814 832 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 Pfam IQ calmodulin-binding motif 837 856 IPR000048 GO:0005515(InterPro)
Lac4g1835 973 FunFam Calmodulin-binding transcription activator 2 811 859 - -
Lac4g1835 973 Gene3D Immunoglobulins 404 497 IPR013783 -
Lac4g1835 973 SUPERFAMILY Ankyrin repeat 607 699 IPR036770 -
Lac4g1835 973 ProSiteProfiles CG-1 DNA-binding domain profile. 18 144 IPR005559 GO:0003677(InterPro)
Lac4g1835 973 CDD IPT 410 494 - -
Lac4g1835 973 Pfam Ankyrin repeats (3 copies) 611 697 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 Gene3D - 512 700 IPR036770 -
Lac4g1835 973 ProSiteProfiles IQ motif profile. 755 783 - -
Lac4g1835 973 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 941 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Lac4g1835 973 ProSiteProfiles Ankyrin repeat region circular profile. 638 664 - -
Lac4g1835 973 SMART ANK_2a 638 667 IPR002110 GO:0005515(InterPro)
Lac4g1835 973 ProSiteProfiles IQ motif profile. 812 841 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0922 Lac-Chr11:10037357 Lac4g1835 Lac-Chr4:37508664 2.80E-91 dispersed
Lac12g0246 Lac-Chr12:2693424 Lac4g1835 Lac-Chr4:37508664 6.80E-111 dispersed
Lac4g1835 Lac-Chr4:37508664 Lac7g1001 Lac-Chr7:8673863 7.70E-90 dispersed
Lac4g1835 Lac-Chr4:37508664 Lac5g1940 Lac-Chr5:37727040 2.70E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23710 PF03859 CG-1 2.30E-48 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1835 K21596 - csv:101222798 1634.0