Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1844 ATGGGAAGAGGAAGAGTAGAACTGAAGAGGATAGAGAACAAGATCAACAGACAAGTGACCTTCGCAAAACGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTGTCCACAAGAGAGGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCACTTGAAAGGCAACTTGATATGTCCCTAAAGCAGATTAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACTGATGTTCAACGTAAGGTGCATCTTCTTAACGAAGCTAACAAGACTCTGAAACAAAGGTTAGTAGAAGGATATCAAGTAAATGCTCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTCCTGGCGATGCCTTCTTCCATCCCTTGGACTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 44.03 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDVQRKVHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37649297 37657466 - Lag0001964.1 Lac4g1844 605376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1844 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac4g1844 242 FunFam MADS-box transcription factor 7 13 98 - -
Lac4g1844 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac4g1844 242 Coils Coil 126 146 - -
Lac4g1844 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac4g1844 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac4g1844 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac4g1844 242 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0182 Lac-Chr10:1400970 Lac4g1844 Lac-Chr4:37649297 1.20E-61 dispersed
Lac10g0592 Lac-Chr10:4542179 Lac4g1844 Lac-Chr4:37649297 5.70E-34 dispersed
Lac12g1856 Lac-Chr12:35022565 Lac4g1844 Lac-Chr4:37649297 9.10E-54 dispersed
Lac2g2405 Lac-Chr2:34446982 Lac4g1844 Lac-Chr4:37649297 1.50E-27 dispersed
Lac2g3066 Lac-Chr2:48615683 Lac4g1844 Lac-Chr4:37649297 7.90E-29 dispersed
Lac4g0364 Lac-Chr4:8508175 Lac4g1844 Lac-Chr4:37649297 1.30E-43 dispersed
Lac4g1844 Lac-Chr4:37649297 Lac6g0809 Lac-Chr6:6972126 6.20E-49 dispersed
Lac4g1842 Lac-Chr4:37573476 Lac4g1844 Lac-Chr4:37649297 2.70E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23712 PF01486 K-box 2.00E-25 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1844 - - - 0.0