Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1857 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTACCAGGAAGAAGGATAACAGTATGGGAGGGAATGAGGATTCTACTGATCAAATGGATGAAGAAGCGCTTTCTAACATCACTAAGCAGAAGGTTGCTGCGGCGAAGCAGTATATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAGTTTTTAGAGAAGAAGGAAACCGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTTGATTTACTAACAATTATTGGCAAAGGTGCCTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAACTTAAAAAATCAGAGATGCTTCGAAGAGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGCATCGTGAAGCTCTATTGTTCTTTTCAAGATGATGAGTTTCTTTACCTTATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCAAGGTTTTATGTTGGAGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTATATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTCGGACTATGCAAGCCATTAGATTGCAGTACACTCCAAGAACAAGATCTTGATATAGCAAGTGGCCGTAATGGAGCTGGACAGAGTGATGAGCGCAATGCAGCGCCTACACGTACTCAACAAGAGCAATTAGAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTATGGAATGGAATGCGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCTACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTTCCTGACGAGGCAAAGCTATCTCCCTTGGCAAAAGATCTCATCAGCAAACTACTGTGTAATGTTAACCAGAGGCTTGGTACAAATGGCGCGGATGAAATTAAGGTTCATCCGTGGTTTGAAGGTACTGAATGGGATAGGCTATACGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTTCTTCATCTAAAAGTGGTCCATGGAGAAAGATGCTCTCATCGAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATTGTCAATGATTATCAATTGCCAGGGATGGCTGAATTGAAGAAAAAATGCAGCAAACCGAAAAGACCGTCAATCAAGTCACTCTTTGATGGCGAGTCAGAGGCGTCAGATACATCTGATACATCTAGTCATGGTCAGCCCACAGAAGGTAGCTTTTCGAAGTCGACCATGACCACAGAAGGTAGCTTTTCGAAGTCAAGCTCAATGACATCTCAACCAGACGTACTTGAAAAGAGTAAAGAGTCGATAAAATTAAATTCGAGCAACGATGGAGGAGGTAGATTTTTGGCATCTAATAATCGTCCTCGGAGCCAAGCCTTTGTCCATGGTACTGTTGTTCATAGTCAGGTGAATAACAGATCTGAAAGAAGACTTTGCAACCTTCCCCTGACTCAGAAGTTCTTTAACGAGACCAGAGTAGATGAAGCCGTCTTTTGGGTAGAAAAAATATCTAGTAAGAGAGGTCATTCAGCTGAAATAGCCAAGCTCGGACCAAATGGTGGCCTTAATAAGCTCATTGTGCCTGTTGGTGAAAATCGAAAAGGATGGCATAGTCTTATTACCTGCATTAACTCCCGCAACACCAATTGGGTCAGCACGAAACAACGGAAGTTTGATAATGGGAGGAAAAATACCTCATACAAGGATGCATTAAAGACGAATCAAAGGGATCATGACACGCTCAACCACCAACAACCTCTGGAAAGAAAACACTTCCACGATAGTTGGTATGACATCTTGAGAGCTCTGCAACAACACTTATCAGATTTGTCTTCAGTCAGCCCCATCCAACCCGACAAAGCCCTCCTGGCTTGTAAAGATGAAGAACAAGCTCGCGTTATAGCCAATATTAAGGGGTGGTACAAGGTCGGAAACTTTCAAGTTCGCTTCTTCCCATGGAGTGCCGATGCTATGCTGAATGAACCAAAAGTACCCTCCTACGGTGGCTGGATAAAAGTAAGGAACTTACCACTAGATAAATGGTCTATCGACATCTTCAAGAAAATAGGAGACGAATGTGGGGGATATTTGGAAACCGCAAACAAAACCCTATCTCGTATGAACATGATGGAGATAGGGATAAAGGTCAAGGAAAATCTTTCGGGCTTTCTTCCAGCGATAGTTCACCTCCCCTCAACATCCAACCGTCCCTATCAGTATCCATCGACCCCTTTTCATGGAGGAATACAACATAGGTTATGTTGCCGGCATTCATGGCAGGATACCACCACCTTCGACGACTTCTAG 2706 42.2 MDSARSWFNKLQPRDRLRGSTRKKDNSMGGNEDSTDQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDLDIASGRNGAGQSDERNAAPTRTQQEQLEHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSPLAKDLISKLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSSSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGESEASDTSDTSSHGQPTEGSFSKSTMTTEGSFSKSSSMTSQPDVLEKSKESIKLNSSNDGGGRFLASNNRPRSQAFVHGTVVHSQVNNRSERRLCNLPLTQKFFNETRVDEAVFWVEKISSKRGHSAEIAKLGPNGGLNKLIVPVGENRKGWHSLITCINSRNTNWVSTKQRKFDNGRKNTSYKDALKTNQRDHDTLNHQQPLERKHFHDSWYDILRALQQHLSDLSSVSPIQPDKALLACKDEEQARVIANIKGWYKVGNFQVRFFPWSADAMLNEPKVPSYGGWIKVRNLPLDKWSIDIFKKIGDECGGYLETANKTLSRMNMMEIGIKVKENLSGFLPAIVHLPSTSNRPYQYPSTPFHGGIQHRLCCRHSWQDTTTFDDF 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37880167 37889927 + Lag0001977.1 Lac4g1857 605389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1857 901 FunFam Non-specific serine/threonine protein kinase 204 271 - -
Lac4g1857 901 FunFam Non-specific serine/threonine protein kinase 318 437 - -
Lac4g1857 901 SMART serkin_6 120 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 MobiDBLite consensus disorder prediction 501 585 - -
Lac4g1857 901 CDD STKc_NDR_like 118 483 - -
Lac4g1857 901 MobiDBLite consensus disorder prediction 571 585 - -
Lac4g1857 901 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 MobiDBLite consensus disorder prediction 9 30 - -
Lac4g1857 901 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 MobiDBLite consensus disorder prediction 287 303 - -
Lac4g1857 901 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 487 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac4g1857 901 Pfam Domain of unknown function (DUF4283) 755 845 IPR025558 -
Lac4g1857 901 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
Lac4g1857 901 CDD MobB_NDR_LATS-like 54 115 - -
Lac4g1857 901 ProSiteProfiles Protein kinase domain profile. 120 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 Coils Coil 62 82 - -
Lac4g1857 901 MobiDBLite consensus disorder prediction 517 562 - -
Lac4g1857 901 Gene3D Phosphorylase Kinase; domain 1 438 448 - -
Lac4g1857 901 Gene3D Phosphorylase Kinase; domain 1 118 203 - -
Lac4g1857 901 Gene3D Transferase(Phosphotransferase) domain 1 318 437 - -
Lac4g1857 901 Gene3D Transferase(Phosphotransferase) domain 1 204 269 - -
Lac4g1857 901 MobiDBLite consensus disorder prediction 282 303 - -
Lac4g1857 901 MobiDBLite consensus disorder prediction 1 42 - -
Lac4g1857 901 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Lac4g1857 901 SMART pkinase_C_6 420 484 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 Pfam Protein kinase domain 316 419 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 Pfam Protein kinase domain 122 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1857 901 SUPERFAMILY Protein kinase-like (PK-like) 93 472 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2162 Lac-Chr12:38708462 Lac4g1857 Lac-Chr4:37880167 1.40E-245 dispersed
Lac1g3623 Lac-Chr1:55326436 Lac4g1857 Lac-Chr4:37880167 4.00E-205 dispersed
Lac2g0475 Lac-Chr2:3485174 Lac4g1857 Lac-Chr4:37880167 2.70E-182 dispersed
Lac3g1052 Lac-Chr3:8601265 Lac4g1857 Lac-Chr4:37880167 4.10E-165 dispersed
Lac3g2573 Lac-Chr3:38997210 Lac4g1857 Lac-Chr4:37880167 1.10E-146 dispersed
Lac4g1857 Lac-Chr4:37880167 Lac6g0317 Lac-Chr6:2595096 7.40E-172 dispersed
Lac9g2843 Lac-Chr9:46427422 Lac4g1857 Lac-Chr4:37880167 1.50E-34 dispersed
Lac9g2932 Lac-Chr9:47112424 Lac4g1857 Lac-Chr4:37880167 4.90E-31 dispersed
Lac4g1857 Lac-Chr4:37880167 Lac4g1866 Lac-Chr4:37942395 2.20E-54 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86134 PF00069 Pkinase 2.20E-63 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1857 K08790 - csv:101221720 994.956