Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1874 ATGGCGGACTCTTCTTTTTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTTCTTAGAAGAAAGTGTGTCCATGGCTGCATCTTTGCTCCTTACTTCCGCCACGAGCTCGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTCGGCGCGAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGTGAAGCGGCAGTCACGATCTCGTACGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGTGTCTCGCATATTTTCGCTCTCCAACAACAGGTTATGAATCTGAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCCTTCTCAACAACTACATTACAAGAAACCCTAGTGAATTACTTTACGAAAAATCCCCATTTTATTCCGACGAGCAATTACAAGATCTTCAAAGTTGGCTTCTAGCCGAGAGCTGCAGCGCCGCCGCACCGGAGTTTGAACCTGCGGCGGTGCCGCCGTACGTTGAGATGAGCGTCACCGATTCAAATCTCGCCGGAGATTTCTGCTACTGA 558 50.18 MADSSFSSSSPPCGACKFLRRKCVHGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLREQAAQILLNNYITRNPSELLYEKSPFYSDEQLQDLQSWLLAESCSAAAPEFEPAAVPPYVEMSVTDSNLAGDFCY 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38028577 38029351 - Lag0001994.1 Lac4g1874 605406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1874 185 Coils Coil 92 112 - -
Lac4g1874 185 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Lac4g1874 185 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Lac4g1874 185 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 127 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2626 Lac-Chr11:42251800 Lac4g1874 Lac-Chr4:38028577 1.30E-49 dispersed
Lac4g1874 Lac-Chr4:38028577 Lac7g0319 Lac-Chr7:2464212 5.50E-37 dispersed
Lac4g1874 Lac-Chr4:38028577 Lac12g1883 Lac-Chr12:35332115 1.20E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23714 PF03195 LOB 2.00E-34 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1874 K13945 - csv:101220863 306.219