Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac4g1881 | ATGGCGGAAATGGAGGATTCAAGATTACTACCGCCACAAACCATGCAACACGAGGACAAAGCTCAAACACAGAGCCAAAGAAAATCAATTTTCTGGGTTTACGCAAGAATTTTTCCCCCCCAGCAATTCAAACTTCTGTTGGACAACTTTCGATCCTCCCATTGTTCTTGCACTCAGAATCAAATGGACGACTCTGTCAATATCGTTGTTGGTTCTCAGATATGGGTGGGAGATATAGAGTCCGTTTGGATTGATGGACTCGTATTGAACATCAATGGGGAAGATGCTGAGATCCAAACCAGTGATGGGAGACAGGTTGTTGTAAAAATGTCAAATCTATATCCAAGGGATGCAGAAGCTCCATCTACTGGAATTGATGATATGACTAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCATAATTTGGCTATCAGATATGCAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAACCCATTCCAAAGTATTTCAAATCTGTACGATGCCTATGTGATGGAGCAGTACAAAGGAGCAAAATTTGGGGAGCTGAAGCCTCATGTATTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAACTCCATTCTTGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACGACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAGTCAAATCCAGTTCTTGAAGCTTTTGGCAATGCGAAAACAGTAAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATACAATTTGACAAGAATGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCGGCTCCACCTCAGGAGAGAGAGAGATATAAGCTGGGAAGTCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCTCATGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTAGCTGCAATTCTCCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCTGATTCATCATTTCTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCTGATGCACTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCGGAGGAAATCATCAAGAAAAGTCTCGATCCGCTTGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTTGATAAAATCAATGTTTCCATTGGACAAGATCCTTGCTCAACATCTCTGATCGGAGTCCTTGATATTTATGGTTTTGAGAGCTTTCAAACTAATAGTTTTGAACAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATTGAATTTGTTGATAATCAAGATGTCCTTGATCTCATTGAGAAGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCTTGCATTCTCCCAAAATCAAATCATGAAACATTTGCACAAAAGCTATATCAGTCCTTCAAAAATCATAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGAATTTGCTATTGTTCATTATGCAGGAGATGGAACAGTGGGGAGGGTGTTCATTGATAGGAAAACGTTCAACCTATGGGAGAGTGGTTGTGGAAAGAAGGTGGTGATTGAGGAACATAGAGGGGCGAGTGGGGAAAGTGGAGCTTGA | 1959 | 40.12 | MAEMEDSRLLPPQTMQHEDKAQTQSQRKSIFWVYARIFPPQQFKLLLDNFRSSHCSCTQNQMDDSVNIVVGSQIWVGDIESVWIDGLVLNINGEDAEIQTSDGRQVVVKMSNLYPRDAEAPSTGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISNLYDAYVMEQYKGAKFGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQERERYKLGSPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFLKDEESKFHLHMTAELLMCDPDALEDALCKRMMITPEEIIKKSLDPLGATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPCSTSLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACILPKSNHETFAQKLYQSFKNHKRFIKPKLARSEFAIVHYAGDGTVGRVFIDRKTFNLWESGCGKKVVIEEHRGASGESGA | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 38092603 | 38102767 | - | Lag0002001.1 | Lac4g1881 | 605413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac4g1881 | 652 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 69 | 118 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | Pfam | Myosin head (motor domain) | 126 | 614 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | PRINTS | Myosin heavy chain signature | 490 | 518 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | PRINTS | Myosin heavy chain signature | 543 | 571 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | PRINTS | Myosin heavy chain signature | 153 | 172 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | PRINTS | Myosin heavy chain signature | 210 | 235 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | PRINTS | Myosin heavy chain signature | 257 | 284 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | Gene3D | - | 313 | 371 | - | - | |
| Lac4g1881 | 652 | FunFam | Myosin heavy chain | 313 | 368 | - | - | |
| Lac4g1881 | 652 | PANTHER | MYOSIN | 83 | 614 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Lac4g1881 | 652 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lac4g1881 | 652 | Gene3D | Kinesin motor domain | 126 | 499 | IPR036961 | - | |
| Lac4g1881 | 652 | ProSiteProfiles | Myosin motor domain profile. | 123 | 617 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | Gene3D | - | 500 | 614 | - | - | |
| Lac4g1881 | 652 | FunFam | Myosin 2 | 373 | 489 | - | - | |
| Lac4g1881 | 652 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 373 | 483 | - | - | |
| Lac4g1881 | 652 | Pfam | Myosin N-terminal SH3-like domain | 71 | 110 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | SMART | MYSc_2a | 117 | 646 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Lac4g1881 | 652 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 97 | 614 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g1881 | Lac-Chr4:38092603 | Lac6g2827 | Lac-Chr6:45895318 | 5.20E-260 | dispersed | |
| Lac4g1881 | Lac-Chr4:38092603 | Lac5g0637 | Lac-Chr5:7723879 | 9.30E-07 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac4g1881 | K10357 | - | csv:101220626 | 1064.29 |