Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1932 ATGTGCAGATTAACAGGCTTTCTTCCCCACAGACGGCGCCAACTGTTGATGGTCGATTTTGGCCAGAGGATCTCACCTGACCTTCACGTGCCACCAACGGTCAAACCAGGCGAAACCGGGGCATCCAGAGGCGGTGGGGACCAGACGGGACCAAACGAGCTCGGCCCGCACGAGCTGGCCGAGGCCGACCATGTGCTCGACCTCGGCCATGGGCCGAGGCCGAGCATGGGGTCGGGTCAAAAACCCGACCCCTTCGGCCTTGGCCCGTCCCGCTTAACGGCTCCGCCTCCTTGGCCCGGTTTCCAGCCCGATTTCTCCCAATTGTCCTCGTCAGCTCCTCGTACATCGGGGTGGTCCAAAATTGCCTATAACACTTATATTATCGACTATGAGAACTCTCTAGAACCCTTCTTTTTCTTCTCTTTAATCTCCCATTTCTCCAATCTCCCTCACTCATCTCACTGCTCTGAGCTCCGACCTCCGTCTGTTCCTTCTTTCCAATCCTTTCATCCTTTTCCTCAGCTCTCTGTTCTCAATTCGTCCCACATGGATGAGGATTTTGATATCCCTGCGGCGGCTGACATGAACGAGGAGTTGGATCTTCCAGACGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTCTTAAGGAAGGTGACGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTACACTGGGACTTTGCTCGATGGGACTCAGTTTGATTCGAGCCGTGATCGTGGAACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGAGCTGGCATATGGTGAATCTGGCTCCCCACCAACAATTCCTCCTAGTGCTACGTTGCAGTTTGATGTTGAACTACTATCTTGGACAAGCGTTAAGGATATATGTAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAGTGGGATAATCCAAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACAATTGTTGCAAAAGCTGATGGAGTGGAATTCACCGTTGGAGATGGTTACTTTTGCCCTGCTCTTGCGAAGGCTGTAAAAACCATGAAGATAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGTTTTGGGGAGAAAGGTAAATCAGCCTCTGGTAATGAAGGTGCAGTTCCACCAAATGCATCTCTTGATATTACTTTACAATTGGTATCTTGGAAGACTGTTTCAGAAGTTACTCCTGATAAAAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCGAACGACGGAGCTGTTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAAGAAGGGATATGATGATGGTGAAGAGCCATTCGAGTTTAAAACAGATGAGGAACAAGTGATTGATGGTCTCGACAAAGCTGTGGCGACAATGAAGAAAGGTGAGACAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCATCTGAGTCACAACAGGAGTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAAGTTGAGCTGGTGGCTTTTGACAAGGAGAAGGAGTCGTGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCCGGAAAATTTGCTAGAGCTTCCAAACGATATGAGAAGGCTGTGAAGTACATTGAATACGATTCTTCATTTAGCGAAGAAGAGAAAAAGCAAGCAAAGGCATTGAAAGTTGCTTGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTGAAGCTGTACAACGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCTGAATTCGACATCAAGAAAGCTCTCGATATCGATCCAAATAATAGGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCCAGTTTTACGGTAACATGTTTGCTAAAATGAAGAAATTAGAATCTGCCTAA 2208 45.56 MCRLTGFLPHRRRQLLMVDFGQRISPDLHVPPTVKPGETGASRGGGDQTGPNELGPHELAEADHVLDLGHGPRPSMGSGQKPDPFGLGPSRLTAPPPWPGFQPDFSQLSSSAPRTSGWSKIAYNTYIIDYENSLEPFFFFSLISHFSNLPHSSHCSELRPPSVPSFQSFHPFPQLSVLNSSHMDEDFDIPAAADMNEELDLPDETVALKVGEEKEIGNQGLKKKLLKEGDGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTIVAKADGVEFTVGDGYFCPALAKAVKTMKIGEKALLTVKPQYGFGEKGKSASGNEGAVPPNASLDITLQLVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAVVKVKLIGKLGDGKIFLKKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESQQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAQFYGNMFAKMKKLESA 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38774699 38779754 + Lag0002052.1 Lac4g1932 605464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1932 735 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 350 439 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 465 561 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 233 323 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 Gene3D - 210 328 IPR046357 GO:0003755(InterPro)
Lac4g1932 735 SUPERFAMILY FKBP-like 330 446 - -
Lac4g1932 735 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 238 326 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 SMART tpr_5 630 663 IPR019734 GO:0005515(InterPro)
Lac4g1932 735 SMART tpr_5 581 614 IPR019734 GO:0005515(InterPro)
Lac4g1932 735 SMART tpr_5 664 697 IPR019734 GO:0005515(InterPro)
Lac4g1932 735 FunFam Peptidylprolyl isomerase 444 566 - -
Lac4g1932 735 Gene3D - 329 443 IPR046357 GO:0003755(InterPro)
Lac4g1932 735 ProSiteProfiles TPR repeat profile. 664 697 IPR019734 GO:0005515(InterPro)
Lac4g1932 735 FunFam Peptidylprolyl isomerase 569 724 - -
Lac4g1932 735 Pfam Tetratricopeptide repeat 664 697 IPR019734 GO:0005515(InterPro)
Lac4g1932 735 Gene3D Tetratricopeptide repeat domain 567 724 IPR011990 GO:0005515(InterPro)
Lac4g1932 735 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 471 564 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 Gene3D - 444 565 IPR046357 GO:0003755(InterPro)
Lac4g1932 735 FunFam Peptidylprolyl isomerase 211 329 - -
Lac4g1932 735 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 354 443 IPR001179 GO:0003755(InterPro)
Lac4g1932 735 PANTHER PEPTIDYLPROLYL ISOMERASE 212 325 IPR050754 -
Lac4g1932 735 SUPERFAMILY FKBP-like 214 330 - -
Lac4g1932 735 MobiDBLite consensus disorder prediction 27 114 - -
Lac4g1932 735 FunFam Peptidylprolyl isomerase 330 443 - -
Lac4g1932 735 SUPERFAMILY FKBP-like 446 581 - -
Lac4g1932 735 SUPERFAMILY TPR-like 569 729 IPR011990 GO:0005515(InterPro)
Lac4g1932 735 Coils Coil 697 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1932 Lac-Chr4:38774699 Lac7g1060 Lac-Chr7:9376241 6.60E-243 dispersed
Lac4g1932 Lac-Chr4:38774699 Lac6g2290 Lac-Chr6:40161049 3.30E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1932 K09571 - csv:101214513 1015.76