Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1933 ATGTCTCGAACACCGAATCATGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAGGAACCATGACGAACACTTGCTGGAAAAGTCCGACAACTTCTCGACGTCACCTGAATTTCTCTCCGTTGAGATCCGGAGTTCTGGAAGTCCTGATGATCGGACGGCGGATAAGGACCGGGCGAGGACCAGAAGTGCCCGCCAGATTTCTTGGGTATGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTTTGGCTTCGATCACCAATGGCGTCGTTTATCTAATCCGCACTGCCAATCGTCGGATCGCATCGCCGGATTCTCCAGCTGATTCGGCCTCGTCTAGGCTCTACAGGATTATCAAAGTGTTTTTGATTGTTGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGGCCCCCTTCCGTGAGTTCCGCTTCTGCAGAGGTCCTTGGAATGATAGGGTTTCTCTATGCGTATTGGCTTGAGATTCGGGCAAATTACTTGGCTCCGCCGCTGCAGGGCTTGACCAATGTGTGCATTGTGTTGTTCCTGATCCAGTCAGTGGATCGGTTGGTTTTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCAATTGAAGCCCGTCGCGGCCTTCGAGTACTCTGCTACCGATGAAAATGCTGAGACTCCTGAAGATTATCCAATGGTGTTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTTTACCAACAATCTATTGCAGCTGTTTGTATCCAGGATTGGCCAAAGGATAAAATGCTTGTACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGCATATTGTATAGACATCGCCTAATACGTACAGGCTACAAGGCAGGAAATCTTAAATCTGCAATGGGGTGCGATTATGTAAAAGATTATGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTCAAGGGGAATGATGAACTTGCGTTGGTCCAAACAAGGTGGACATTTGTGAACAAGGATGAAAACTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCCTGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGGGGCTGGTTAGAAAGAACAACGGTTGAGGACATGGATGTTGCAGTCCGTGCCCATCTTTGTGGCTGGAAGTTCATATATCTAGATGATGTAAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCGTACAAGAAACAACAACACCGCTGGCATTCAGGCCCAATGCAGTTATTTCGTTTATGCTTCTCTGATATACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCTAATTTGATTTTCCTTTTCTTCCTCTTGCGAAAGCTCGTCCTTCCCTTTTATTCCTTTACCTTATTCTGCGTAATTCTCCCCCTGACCATGTTCCTTCCAGAAGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGAATCATGTCCATCTTAAATATTCTCCCCGCACCGCGGTCGTTTCCTTTCTTAGTCCCTTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATCAGGGTTATTCCGCTTTGGAAGTTCATACGAATGGATAGTAACAAAAAAACTAGGAAGATCATCTGAAAACGATCTTGTTGCTTTCGAAAAAGAGCTAGAACCTCTAGTTGAAGGTACAGGTCTTCATCGATCCTCCTCGGAATCAGGTCTGCAGGAACTGACCAAGCTCGAGATATCAAAAAGAACAGGGAAAAGCAAAAGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACCGCTTCAGTGAGAAGTTTGTTATCTGCTCAAGGAATTCACTTCTACTTCCTATTATTTCAGGGTATCACTTTTCTAGTAGTCGGTCTCGATTTAATCGGAGAGCAGCTGCGGATCACTTCTTGCTCATGTATTTGGGATCTATTTGCTTCTGATTGTGGGACTGTCATGTTGTAG 2145 44.06 MSRTPNHEFQEWWNKQRERNHDEHLLEKSDNFSTSPEFLSVEIRSSGSPDDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGVVYLIRTANRRIASPDSPADSASSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFRPPSVSSASAEVLGMIGFLYAYWLEIRANYLAPPLQGLTNVCIVLFLIQSVDRLVLMLGCFWIKFRQLKPVAAFEYSATDENAETPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWTFVNKDENLLTRLQNINLSFHFEVEQQVNGLFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDVAVRAHLCGWKFIYLDDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWKKKANLIFLFFLLRKLVLPFYSFTLFCVILPLTMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENDLVAFEKELEPLVEGTGLHRSSSESGLQELTKLEISKRTGKSKRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQLRITSCSCIWDLFASDCGTVML 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38781815 38796572 - Lag0002053.1 Lac4g1933 605465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1933 714 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 449 IPR029044 -
Lac4g1933 714 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 159 692 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Lac4g1933 714 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 511 IPR029044 -
Lac4g1933 714 FunFam probable xyloglucan glycosyltransferase 5 224 450 - -
Lac4g1933 714 Pfam Glycosyl transferase family group 2 326 523 IPR001173 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1933 Lac-Chr4:38781815 Lac6g0224 Lac-Chr6:1786030 9.20E-242 dispersed
Lac4g1933 Lac-Chr4:38781815 Lac2g0428 Lac-Chr2:3122723 1.20E-246 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1933 - - - 0.0