Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1936 ATGGAGAACGAATTCTTGTTCAATGCTACTGGAATCTCTCAATCTCTCATGCATTTCGACTCCAATCCTTCTTCCATGCCCAATTGGCACCACCACTTCTCGTCCGCCATGGATGTTCAACCTCAACCTCAACCTCAACTTCCGGAGCTTAATCACTCGCCACCGGATTCTTTCCTCAATCCGCTTCCCGATCACACCTTCCAATTCGATTCCGCTCTGGCTTCTATGGCTACTTCTCCTGCGGCCTCCAATTCTAACCTCACCAACGACACCTTCGTCATCAGAGAGCTGATCGGGAAATTGGGCGGGAATTCCGACAGGAGAATCTTGGAATTGAATTCTTCTTCTTCTTCCAGTGTGGCGGAATTTTCGTCCGATCCTGGATTTGCAGAGCGGGCCGCTAGGTTTTCCTGCTTTGGAAGTAGGAGCTTCAATGGCCGTCAGTTGACGAACGAATTCGCTGATTACAGATCTCACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTCTCCAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAATTTGCAAGAACACAAGAACAATTCCTCATCGCAAGAAGACGAATCGTCTCTCTCTAATCCGGACAAGGCGGTTTTGAATCCACGGAAGAGAAAGGCAATTACGAAGGCCAAACTCAAAGAACCGGTGGTTGAAGTTCCCGAAAAGGGAAGTCCGAAGAAATTGAAGGCAGTAGTAGAAACGAAGGAAAACGAAAAGGGCAACGTGAAAACAGAAGAGGATTCGAAGAAAAGCGATGGAAATTTGGCCGAAGAGAAGCAAACGAAGGCGAATTCGAAGCCTCCTGAACCTCCAAAAGATTACATTCATGTCAGAGCAAGAAGAGGCCAAGCTACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTCCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTGGATGAGATAATCAATTATGTGCAGTCATTACAACACCAAGTTGAGTTTCTGTCCATGAAGTTGGCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGCACTAGTTTGACACATCCTCAAATTTCCCCTATAGATTCCTCAGCTTCAACCTTTTATGGGCACCAAAATCCCTCTCTCCCAACCACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCCAATTCAACTCCCTCCTCTCAATTCCTTCCCCCAAAATCCCTCTCAGTATCCAAGTTTTGGGGAAGATGAACTTCAGAGCATTGTTCAGATGGGATTTGTCCAAAATCAGACCCAAGAAATATCATTGCAATCTCACAACTTCAACATAGGCTCAGACCAAATGAAAATTGAACTCTGA 1449 45.48 MENEFLFNATGISQSLMHFDSNPSSMPNWHHHFSSAMDVQPQPQPQLPELNHSPPDSFLNPLPDHTFQFDSALASMATSPAASNSNLTNDTFVIRELIGKLGGNSDRRILELNSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFADYRSHLSIANEKLSRVSSSPSLKALGSETNLQEHKNNSSSQEDESSLSNPDKAVLNPRKRKAITKAKLKEPVVEVPEKGSPKKLKAVVETKENEKGNVKTEEDSKKSDGNLAEEKQTKANSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLISKQMYQSGTSLTHPQISPIDSSASTFYGHQNPSLPTTSHCSVDPLDSVLCQNLPIQLPPLNSFPQNPSQYPSFGEDELQSIVQMGFVQNQTQEISLQSHNFNIGSDQMKIEL 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38823496 38825729 - Lag0002056.1 Lac4g1936 605468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1936 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 358 IPR036638 GO:0046983(InterPro)
Lac4g1936 482 CDD bHLH_AtBPE_like 283 369 - -
Lac4g1936 482 MobiDBLite consensus disorder prediction 171 206 - -
Lac4g1936 482 FunFam Basic helix-loop-helix transcription factor 290 362 - -
Lac4g1936 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 343 IPR011598 GO:0046983(InterPro)
Lac4g1936 482 MobiDBLite consensus disorder prediction 171 284 - -
Lac4g1936 482 MobiDBLite consensus disorder prediction 220 284 - -
Lac4g1936 482 SMART finulus 299 349 IPR011598 GO:0046983(InterPro)
Lac4g1936 482 Pfam Helix-loop-helix DNA-binding domain 297 344 IPR011598 GO:0046983(InterPro)
Lac4g1936 482 MobiDBLite consensus disorder prediction 29 56 - -
Lac4g1936 482 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 120 455 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lac4g1936 482 MobiDBLite consensus disorder prediction 29 46 - -
Lac4g1936 482 Gene3D - 290 362 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0610 Lac-Chr10:4683919 Lac4g1936 Lac-Chr4:38823496 1.10E-34 dispersed
Lac3g0035 Lac-Chr3:309364 Lac4g1936 Lac-Chr4:38823496 1.20E-35 dispersed
Lac4g1936 Lac-Chr4:38823496 Lac7g1062 Lac-Chr7:9396666 2.50E-65 dispersed
Lac4g1936 Lac-Chr4:38823496 Lac8g2147 Lac-Chr8:39867065 1.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23718 PF00010 HLH 3.60E-06 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1936 - - - 0.0