Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1946 ATGAACGATGTGAAAGATCATAATCAAGAGGAAATTCCAGAATTGGACTTTGAGAGATTGGAAGTGGTAACGGCGCTCGGCCGAGGAGCCAAAGGAGTGGTGTTTTTGGCACGGAATGCAGACGAAAGAGAAGGCGAATGGCTGGCGTTGAAGGTAATTTCCAGAGAATTGATCGAGAGGAAGGCCAAGATCGTCAAAACCGAAGGAGATGAGTACCGTAGAGTTTGCTTTGAACGAGAAGTCTTGCGTCTCTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGGATACTCGAAAAGTTGTTGGTTACGCCATTGATTATTGCAATGGTCGAGATCTTAATACTCTCAGGAAAAAACAGACCGAGAAAATGTTCTCCGATGACGTCATCAGGTTTTACGCTGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGTTTAGGCATAGTTTACAGAGATTTAAAGCCGGAGAATGTTATGGTTCAACAGAACGGTCATGTAATGCTTGTCGATTTTGATCTCTCTACAAGACTCCCTCCAAAATCTCCTAAATCGTCACCGTCGCCGAAGATTTTGACGGAATCCGAATCGGCGATGAAGAAGAATGAGAAGAGGAAGAAGAAAAGATTCTTTCATTTTCACCGATTCTGCAACTCCGGCGTTTCACCAGAAGATTCCGACCAACAGACAGCGGCGGAGAAGCCAAGATCGCCGCCTGCGTCGTCGTCGTCAGAATCAGACTCGTCCGAGAAGTCGAACTCGTTCGTCGGAACGGAGGAGTACGTGGCGCCGGAGATCATCGCCGGGAAGGGCCATGACTTCGCCGTGGACTGGTGGTCCCTCGGCGTCGTTCTGTACGAGATGCTGTACGGAACGACGCCGTTTAGGGGATCGAATCGGAAGGAGACGTTTTACCGGATTCTGACGAAGTCCCCGGATCTATGCGGGGAAGCGACGCCGTTGAGGGATTTGATAAAGAAGCTGCTGGAGAAAGATCCGACGAAGAGGATCGAACTCGAGGAGATCAAGGGCCACGAATTCTTCAAAGGAACCGACTGGGATTTGGTTTTGGAAATTCCCCGGCCGCCGTCGCTGCCAGAAATAGCGGCGGAGGACATAGATGGAAATAAGTTAATTAACGTGGAGTGTTTTGTCCAAGATGTATTTTGCAGCGAAGCGGAGAAGAAGAATTGTATGAACGGCGATGAAGGAAAAGGGATTATTACTAATCACACGGAGTCTGACAGATTTAATGTATTCTGA 1269 48.23 MNDVKDHNQEEIPELDFERLEVVTALGRGAKGVVFLARNADEREGEWLALKVISRELIERKAKIVKTEGDEYRRVCFEREVLRLFRHPLLPRLRGVLDTRKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQQNGHVMLVDFDLSTRLPPKSPKSSPSPKILTESESAMKKNEKRKKKRFFHFHRFCNSGVSPEDSDQQTAAEKPRSPPASSSSESDSSEKSNSFVGTEEYVAPEIIAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKSPDLCGEATPLRDLIKKLLEKDPTKRIELEEIKGHEFFKGTDWDLVLEIPRPPSLPEIAAEDIDGNKLINVECFVQDVFCSEAEKKNCMNGDEGKGIITNHTESDRFNVF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38951202 38952569 + Lag0002066.1 Lac4g1946 605478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1946 422 PANTHER FLIPPASE KINASE 1-RELATED 11 373 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lac4g1946 422 Pfam Protein kinase domain 21 185 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1946 422 Pfam Protein kinase domain 246 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1946 422 MobiDBLite consensus disorder prediction 180 204 - -
Lac4g1946 422 SUPERFAMILY Protein kinase-like (PK-like) 18 372 IPR011009 -
Lac4g1946 422 ProSiteProfiles Protein kinase domain profile. 20 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1946 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1946 422 Gene3D Transferase(Phosphotransferase) domain 1 114 182 - -
Lac4g1946 422 FunFam Serine/threonine-protein kinase OXI1 114 182 - -
Lac4g1946 422 MobiDBLite consensus disorder prediction 223 257 - -
Lac4g1946 422 Gene3D Phosphorylase Kinase; domain 1 20 113 - -
Lac4g1946 422 FunFam Serine/threonine-protein kinase OXI1 252 369 - -
Lac4g1946 422 SMART serkin_6 20 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1946 422 Gene3D Transferase(Phosphotransferase) domain 1 245 369 - -
Lac4g1946 422 MobiDBLite consensus disorder prediction 221 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1946 Lac-Chr4:38951202 Lac9g2843 Lac-Chr9:46427422 8.80E-75 dispersed
Lac4g1946 Lac-Chr4:38951202 Lac9g2687 Lac-Chr9:45166135 2.80E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86135 PF00069 Pkinase 1.40E-29 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1946 K20714 - csv:101223223 634.409