Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1968 ATGGCAAACACTAAAGTTCTTCTCTTCTTAGCTCTCTTAGCTACTTTACTCACTAATGGCATCTTTGTTAGAGCCATTTCTGATGACAATGTGGGTGTTGTAGAGCACTCATGTGCCTCCACTCTTTATCCTCAACTATGTCATTCGACAATATCCTCCGTCGTAGGAACATCCAACATGTTGAGTGTGAAAGATATAGTCGAAGTCTCGTTGAATGTTGCTATCGATGCAGCTACGCATAACCACAAGTTCGTCAAGAGACTTTCGATGTCGCTCAATGATGTTACCAAACGAGGGAGAATTGCTCTCCATGATTGTATCGAGACCACCCACAAGACACTCGATGACCTTTACAAGGTCGTAGAGGATCTTCGTCAGTACCCCAAAAAGAAATCTCTTGCCTTATACGCTGATGACCTCAAAACCTTTCTCAGTTCTGCCATTACCAACCAGGACACTTGTTTGGAGGGATTATTATCGCACGAGAAAGCTGACACAAGAGTGTTGAAGTTCATTGAAGAGACACATACTCACGTCACAAAGTTGTGTAGTAATGCATTGGCGTTGGTGAAGAAGCTGACTGACACTGATATAACAAATCAGAAAAAGTTGGATATCCCTTTCCCTAAGAAAATGGGTTCATCCATTCTAAGACTCTTTTCCGACGTTACCAATGAGGAAAAAGGTGAGAATAGGGGAAGAGAGGATTTAGAAGATGGAATCAAGTGGCCAGAATGGATGGCAATCAGCGACCAGAAGCTTTTGGAGTCATCGACGACGGAAGCGGCGGCGGACGTGGTGGTGGCGGCGGACGGAAGTGGAAATTATCGAACAGTGTCGGAGGCAGTGGCGGCGGCGCCGAGTAAGAACAGCAAAAGATATGTAATAAGAATCAAGGCTGGAGTTTACAGGGAAAATGTTGAAGTACCAAGCAGTAAGAAGAATATTATGTTTTTGGGAGATGGAAGATCCAATACCATTATCACTGGTGACAGAAGTTTTGGGGGTGGCAGCACAACCTTCAATTCCGCTACAGTCGCTGCTGTGGGAGATGGATTCTTAGCTCGAGACATAACCTTCGAAAACACAGCCGGAGCAGCCAACCACCAAGCCGTAGCGCTCCGCGTTGGTTCAGATCAGTCAGCCTTTTACCGTTGCGGCATTCTAGCCTACCAAGACACTCTCTATGTCCACTCCAACCGCCAATTCTTCGTCAACTGTGTCGTCGCGGGCACAGTCGACTTCATTTTCGGAAACGCGGCAGTAGTGATCCAAAATTCGGTCCTCACCCCGCGCCGACCAGGCCCTAGCCAACAGAACATGGTCACGGCACAAGGGAGAACCGATCCGAACCAAAACACGGGAATCGTGATCCAAAAGTGCACGATCAAAGCGACCGCGGACTTGGAGCCAGTGATAAAACAGTTCCCAAGCTTCCTTGGGCGGCCGTGGAAGGAATATGCTAGGGTTGTGGTTATGCAGACAGCTATAACCAACGTGATAGATCCAAAGGGGTGGGCGCCATGGGACAAGGATTTTGCTCTTAAGACACTCTTTTTTGCTGAGTATGACAACAATGGAGCTGGAGCCAATACTTGTTGTCGGGTGTCGTGGTCCTCCATTATCAATGCAGATCAAGCTAAGGCTTTTACGGCTGGACCATTTATTGGTGGTGCCGATTGGCTTCCCTCCACTGGCTTCCCCTATCAACTTGGCCTCTAA 1722 47.56 MANTKVLLFLALLATLLTNGIFVRAISDDNVGVVEHSCASTLYPQLCHSTISSVVGTSNMLSVKDIVEVSLNVAIDAATHNHKFVKRLSMSLNDVTKRGRIALHDCIETTHKTLDDLYKVVEDLRQYPKKKSLALYADDLKTFLSSAITNQDTCLEGLLSHEKADTRVLKFIEETHTHVTKLCSNALALVKKLTDTDITNQKKLDIPFPKKMGSSILRLFSDVTNEEKGENRGREDLEDGIKWPEWMAISDQKLLESSTTEAAADVVVAADGSGNYRTVSEAVAAAPSKNSKRYVIRIKAGVYRENVEVPSSKKNIMFLGDGRSNTIITGDRSFGGGSTTFNSATVAAVGDGFLARDITFENTAGAANHQAVALRVGSDQSAFYRCGILAYQDTLYVHSNRQFFVNCVVAGTVDFIFGNAAVVIQNSVLTPRRPGPSQQNMVTAQGRTDPNQNTGIVIQKCTIKATADLEPVIKQFPSFLGRPWKEYARVVVMQTAITNVIDPKGWAPWDKDFALKTLFFAEYDNNGAGANTCCRVSWSSIINADQAKAFTAGPFIGGADWLPSTGFPYQLGL 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39158236 39164899 - Lag0002088.1 Lac4g1968 605500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1968 573 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 195 IPR035513 -
Lac4g1968 573 Pfam Plant invertase/pectin methylesterase inhibitor 34 189 IPR006501 GO:0004857(InterPro)
Lac4g1968 573 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 194 IPR035513 -
Lac4g1968 573 PANTHER PECTINESTERASE 10 564 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac4g1968 573 NCBIfam pectinesterase inhibitor domain 10 194 IPR006501 GO:0004857(InterPro)
Lac4g1968 573 FunFam Pectinesterase 259 573 - -
Lac4g1968 573 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Lac4g1968 573 Gene3D - 259 573 IPR012334 -
Lac4g1968 573 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Lac4g1968 573 Pfam Pectinesterase 265 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac4g1968 573 SMART PMEI_2 29 189 IPR006501 GO:0004857(InterPro)
Lac4g1968 573 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Lac4g1968 573 FunFam Pectinesterase 31 194 - -
Lac4g1968 573 CDD PMEI-like_3 37 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1968 Lac-Chr4:39158236 Lac4g3068 Lac-Chr4:48810519 2.30E-179 dispersed
Lac4g1968 Lac-Chr4:39158236 Lac12g2508 Lac-Chr12:42045189 3.20E-184 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1968 K01051 - csv:101221055 786.178