Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g1999 ATGGAAATTCAAAAAATTTCCCCTAAAACACGATTTTTCATTCCTAAAACTCTGCTACCGTATTCTCTCATCTTCTCCATTGTTCTTCACTGCTTTCGTCTTCTTCTTTCCGAAAACAGGTGGGTTTCGGCTTATCTCGTCTTCTCCATTGTATCGTTAGGGCTTCACGCGACAAAGAGTGAGAAATGGGATTCACTTTCTTATGGAGCGGACGAAAAACCTAATCAGAACCAAGACACACATCGCGATGCTCTTGTAGATTGGGTTAGGGCTTTGGGCGACATTGTCACAGCGTTTGATTTCACAACTAAAGGGATTCTTGAAGCTATCGTTCAAGGGGAGCTATGGAGGTTGAAGGATTCTAATGGGAAGCCGCCGAGATTCATCGGAATCAAGCCGAAAAGTGTCGTGACTTTCATCGACAATCACGACACCGACTCCAAAGTGGCATTGATGGACCTGCAGCTCTTGTGGGTTGGCTTCTTTTTGTGCTGTGGATTTTGGGTTCTTGCTTTAACTGATCAAGATGGTTTTCTAAGCTTATCTTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATCTCATGGATTCCGGACATCGACTACATCGGCTCCGGTAACACATCGATTATCGACAATGGCGAGGGCGGATCCTTTTCCAGTGGCCATGTTCGGTTCTTCCCCGACCCCCGAGCGCGAAAATGTTACAAGCTGCCACTGAAAAATGGCTCCTCATCAGTCCTCATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGGAAGCCCCCTGCATTCTCTGTTTCTGTTGGCACAGCCATAACTAGCATTGTGAACCTCACTTCTCATGACCCTTGGACAGAGGAGTTTGTATGGCCACTTAACAAGGACACTGTCTCTTTCTGTTTGCATTCCATTCCTCACGGCGGCAGCCCTCTCATTTCTTCGCTCGAACTCCGACCGCTGCCGCACGGAGCGTACCACGATGGCTTGCTTCCAAGTCAGGCTCTTAGAAAGTCCTATCGAATCAATTGTGGTTACACTAACGGATCCCTCAGGTACCCGATCGATCGATACGATCGAATCTGGGACGCGGATAGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCCAACTTTGATTCTATAGATCAAGTGAAGGAAGCTCCACCAGCTGTAGTGGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTGCCACTTGAAGAACAAGGAGATTACTTTTTGATTTTGTATTTTGGTGGAATTCTTGCTGTTCATCCTTCATTTGATGTGTTGATCAATGGGAAAGTTGTAGAATCAAACTACACTGTGGAAATGGGAGAGATGAGGGCTTTGTATGTCATTCAAGAGCAAATCAAGAGCTTGAATATCACTCTCAAGAGTGTTAGATTCTACCCTCAAGTCAATGCCCTTGAGGTCTATCAGATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAAGTGATTCACCAATCTAGTGGTTTGAATTTGGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTGGAGCTTTCCGACATCAACTTGAGGTCGATCAGCCCGACGTTCGGCGACATTCTCGACCTCAAAATACTGGATTTACACAACACTTCACTTACAGGGGAAATTGAAAATTTGGGCAGCCTGACTCATCTTGAAAATTTGAACTTGAGTTTCAACCAGCTAACATCATTTGGGACAGATTTGGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCATCTATTGAATTTGGAGAACAATAGGCTGGAAGGAACCCTCCCATTGTCTTTAGACAAAGGAAGCCTTGAAATTAGAACATCAGGAAATCCTTGCCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAATCCAGCCATTGAAACACCACAAGTCACAGTGGTTCCTGAGAAGAAGGAGATGAGCAGCAGCCACAATGATAATAACAAAAATCATATGCCAATCACAATCATTGTTTGTGCAGTTGCAGCAGCTTTGCTGGTTCTCATCACTCTCTCTCTTTCACTTCTACTCTACATCAGAAAACATTCATCTCAACACACAACTCAACTCACATACTCAACAAAGGCAGCAATGGAGCTTAGGAATTGGAACTCTGCAAAAGTTTTCTCGTACAAGGAGATCAAGGCAGCAACAAACAACTTCAAGGAGGTGATTGGGCGAGGAAGCTTTGGATCTGTCTATCTTGGAAAGCTTCCTGATGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAAGCCAACTTGGGGCTGATTCCTTTATCAATGAGGTTCATCTCTTGTCTCAAATTCGTCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTATGAATATTTACCTGGTGGATCCTTGGCTGACCACATCTATGGCATAAACAAGAAAAGTGTTTCACTTAGCTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGCGAACCAAGAATAATCCACCGTGATGTGAAGTGTAGTAATATCCTTCTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTCTCCAAGCAAATAGCACACCCTGATGCAACTCATGTCACAACCCTTGTCAAGGGCACCGCTGGTTATTTGGATCCTGAATATTACTCCACTCAACAATTGACCGAAAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTATTGGAACTTATTTGTGGACGAGAGCCTTTGAGTCGCACAGGAACTCCTGATTCTTTCAACTTGGTGTTATGGGCAAAACCCTACTTGCAAGCAGGTGCATTTGAGATAGTAGATGAAAGTTTGAGTGAAAGCTTTGGTGTTGAAAGCATGAAAAAGGCAGCTTTTATTGCTATAAGATGTGTAGAGAGAGATGCTTCTCTAAGGCCTAACATAGGACAAGTTTTGGCTGATCTCAAAGAAGCTTATGATGCACAAATTGCATATCTTTCTACTTTTGACCATTGA 3198 43.25 MEIQKISPKTRFFIPKTLLPYSLIFSIVLHCFRLLLSENRWVSAYLVFSIVSLGLHATKSEKWDSLSYGADEKPNQNQDTHRDALVDWVRALGDIVTAFDFTTKGILEAIVQGELWRLKDSNGKPPRFIGIKPKSVVTFIDNHDTDSKVALMDLQLLWVGFFLCCGFWVLALTDQDGFLSLSCGATTTFTDSSNISWIPDIDYIGSGNTSIIDNGEGGSFSSGHVRFFPDPRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFSVSVGTAITSIVNLTSHDPWTEEFVWPLNKDTVSFCLHSIPHGGSPLISSLELRPLPHGAYHDGLLPSQALRKSYRINCGYTNGSLRYPIDRYDRIWDADSNFKPFHVSSGFKVEANFDSIDQVKEAPPAVVVETARVLARRDELSYNLPLEEQGDYFLILYFGGILAVHPSFDVLINGKVVESNYTVEMGEMRALYVIQEQIKSLNITLKSVRFYPQVNALEVYQIVHVPLEASSTTVSALQVIHQSSGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSDINLRSISPTFGDILDLKILDLHNTSLTGEIENLGSLTHLENLNLSFNQLTSFGTDLENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLSLDKGSLEIRTSGNPCLSFSTMTCNDVSSNPAIETPQVTVVPEKKEMSSSHNDNNKNHMPITIIVCAVAAALLVLITLSLSLLLYIRKHSSQHTTQLTYSTKAAMELRNWNSAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGINKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQIAHPDATHVTTLVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSRTGTPDSFNLVLWAKPYLQAGAFEIVDESLSESFGVESMKKAAFIAIRCVERDASLRPNIGQVLADLKEAYDAQIAYLSTFDH 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39483654 39497190 - Lag0002119.1 Lac4g1999 605531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g1999 1065 Gene3D Glycosidases 52 159 - -
Lac4g1999 1065 Gene3D Transferase(Phosphotransferase) domain 1 854 1061 - -
Lac4g1999 1065 ProSiteProfiles Leucine-rich repeat profile. 588 610 IPR001611 GO:0005515(InterPro)
Lac4g1999 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 900 912 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g1999 1065 SMART serkin_6 778 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1999 1065 Pfam Malectin-like domain 181 495 IPR024788 -
Lac4g1999 1065 Gene3D Phosphorylase Kinase; domain 1 739 853 - -
Lac4g1999 1065 SUPERFAMILY L domain-like 508 656 - -
Lac4g1999 1065 Gene3D - 340 496 - -
Lac4g1999 1065 SMART LRR_typ_2 609 632 IPR003591 -
Lac4g1999 1065 SMART LRR_typ_2 586 608 IPR003591 -
Lac4g1999 1065 Gene3D Ribonuclease Inhibitor 506 688 IPR032675 -
Lac4g1999 1065 ProSiteProfiles Protein kinase domain profile. 778 1060 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1999 1065 CDD STKc_IRAK 784 1051 - -
Lac4g1999 1065 Pfam Protein kinase domain 780 1047 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g1999 1065 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 854 1060 - -
Lac4g1999 1065 ProSitePatterns Protein kinases ATP-binding region signature. 784 806 IPR017441 GO:0005524(InterPro)
Lac4g1999 1065 SUPERFAMILY (Trans)glycosidases 81 153 IPR017853 -
Lac4g1999 1065 FunFam serine/threonine-protein kinase PBS1-like 746 853 - -
Lac4g1999 1065 Pfam Leucine rich repeat 588 646 IPR001611 GO:0005515(InterPro)
Lac4g1999 1065 SUPERFAMILY Protein kinase-like (PK-like) 761 1049 IPR011009 -
Lac4g1999 1065 PANTHER OS07G0107800 PROTEIN-RELATED 605 1052 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1999 Lac-Chr4:39483654 Lac4g2950 Lac-Chr4:47831658 7.90E-88 dispersed
Lac5g2333 Lac-Chr5:42003177 Lac4g1999 Lac-Chr4:39483654 1.20E-45 dispersed
Lac4g1999 Lac-Chr4:39483654 Lac4g2007 Lac-Chr4:39594202 2.00E-62 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86136 PF12819 Malectin_like 4.40E-53 CL0202 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g1999 - - - 0.0