Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2007 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAGCGAAAAGAGCAAAGAGTAGTAGAAGAGAACAATCTGTTTCGTTGCATTCTCGCAGTCATAAACAACAACAGCAGCAGCAGCAACAACCTGCTCCTGCTCCTGCTCCGGCTCCTCCTCCTCCACGCCCTACGCCAACGGAAAATCCAAAAGTAAACCAGGTGCAGAAGGATGTAGAGAAAGAGAAAGAGATTATTGGGGAAAATAATAACATTGCAGCGCAGACCTTCACATTCAGAGAGCTGGCCACTGCCACAAAGAATTTCCGTCAAGAGTGTCTCATTGGAGAGGGAGGGTTTGGGAGAGTTTACAAAGGCAAACTTGACAAAACTAACCAGGTGGTAGCAGTGAAGCAGCTTGACAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAGGTTTTGATGCTCAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTGGTATATGAGTATATGCCTTTGGGATCTCTAGAAGATCATCTACTTGACATTCTACCAGGGAGAAAGGCATTGGATTGGGCAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGCTAGAGTACTTACACGACAAAGCAAATCCACCAGTGATATATAGAGATTTGAAAGCATCAAACATTCTATTGGACGTTGATTTCAATGCAAAGCTGTCGGATTTTGGGCTGGCAAAGCTTGGACCTGTTGGGGACAAGTCTCATGTTTCCTCCAGGGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGGACTGGCCAACTCACTCTCAAATCTGATGTCTATAGCTTTGGCGTTGTCTTGTTGGAGCTCATCACTGGCAAGAGAGTCATCGACAACACTCGTCCAGTTAAACAACAAAACTTGGTCGCTTGGGCATATCCAATATTCAAGGAACCAAATAGATTCATGGAGTTGGCAGATCCTCTTCTAGCTGGAGACTTCCCTGTGAGAGCTCTGAACCAAGCAGTCGCGGTCGCCGCCATGTGCCTCCACGAGGAAGCATCGGCCCGACCGTTGATGAGTGACGTCGTTACTGCTCTCAGCTTCTTGGGTGCAGAAGCCACACATTCGTTGTCGTCATCATCGTCGTCATCAGATGATCTCCCTTCACCACTATTTGATCAAAATCCGATCAATTCAGCAAAATCCAATGAAGACGAAATGGCTGAGGCACGCCAGCGAGCGGTTGCCGAAGCCATCGAATGGGGTTGCTCCTCCAAGCAAAATGCAGCTGCTTCCCGCCCGGGAAGTTGTTCTTCCTTGTAA 1350 46.89 MSCFPCFSSHGKAAKRAKSSRREQSVSLHSRSHKQQQQQQQQPAPAPAPAPPPPRPTPTENPKVNQVQKDVEKEKEIIGENNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDILPGRKALDWATRMKVGLGAAKGLEYLHDKANPPVIYRDLKASNILLDVDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDNTRPVKQQNLVAWAYPIFKEPNRFMELADPLLAGDFPVRALNQAVAVAAMCLHEEASARPLMSDVVTALSFLGAEATHSLSSSSSSSDDLPSPLFDQNPINSAKSNEDEMAEARQRAVAEAIEWGCSSKQNAAASRPGSCSSL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39594202 39598402 - Lag0002127.1 Lac4g2007 605539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2007 449 MobiDBLite consensus disorder prediction 1 69 - -
Lac4g2007 449 SMART serkin_6 101 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2007 449 FunFam Serine/threonine-protein kinase PBS1 178 393 - -
Lac4g2007 449 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Lac4g2007 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2007 449 FunFam Serine/threonine-protein kinase PBS1 71 177 - -
Lac4g2007 449 MobiDBLite consensus disorder prediction 44 60 - -
Lac4g2007 449 CDD STKc_IRAK 107 375 - -
Lac4g2007 449 Gene3D Phosphorylase Kinase; domain 1 69 177 - -
Lac4g2007 449 Pfam Protein kinase domain 103 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2007 449 SUPERFAMILY Protein kinase-like (PK-like) 87 389 IPR011009 -
Lac4g2007 449 Gene3D Transferase(Phosphotransferase) domain 1 178 395 - -
Lac4g2007 449 MobiDBLite consensus disorder prediction 388 411 - -
Lac4g2007 449 MobiDBLite consensus disorder prediction 388 421 - -
Lac4g2007 449 PANTHER OS07G0668900 PROTEIN 36 391 - -
Lac4g2007 449 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g1859 Lac-Chr3:20715495 Lac4g2007 Lac-Chr4:39594202 2.40E-120 dispersed
Lac4g2007 Lac-Chr4:39594202 Lac7g0849 Lac-Chr7:6877120 5.60E-136 dispersed
Lac4g1999 Lac-Chr4:39483654 Lac4g2007 Lac-Chr4:39594202 2.00E-62 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86137 PF00069 Pkinase 1.10E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2007 - - - 0.0