Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac4g2022 ATGGCGATTCTGAAGCTTTTACCTCTCTGCATTTCCTTCTTCTTATTGATCAGAGCCCCTGTACGAGGTGATTCCTTACATTTACCTTCTTCTTCTTCCTCTTCTTTTTCTTCTGATGTTCAGCTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGTGACTCTCAAAACTTGCTTTTGTCTTCATGGAATTACTCTTTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAGTGGGACTCCTCTGGTTTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTGTTCAAAGACCCTTCTCTTCATGTTCTCTCTCTGCAACTTCCTTCTGCTAATCTCACTGGTTCGTTGCCTAAAGAGATTGGTGAGTTCACTATGCTCCAAAGCCTGTATCTAAGCATAAACTCTTTGAGTGGAACCATTCCACTTGAGCTTGGTTACAGCTCCTCTCTTTCTGATATTGATTTGAGTAGCAATCTGTTGACTGGAGCCCTTCCGCCATCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGACTTCATGGAAATTCATTATCTGGGTCGCTGCCGGAGCCGGCTTTACCAGACTCCACTTGCAAGAATTTGCAGGCTTTGGATTTGGGCAACAACCAAATTTCAGGTACTTTTCCAGAATTCATTACTAGATTTCAGGGTCTGAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGGCAAATCCCTCAGAGCTTAGGCCAGTTGGAGTTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCCGTTTTTGGTAACTCAAAGTTTGGTGTGGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTCTGAAAAGCTGTGCAGGACCTTCCCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACGGTGGTTTTAGCTTCATTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGAGTAGGAGCGAGAGTGAAGATGAGATTGAGGAAGGAGAAGATGAAGAAAACGGCGGCACTATCGGCACCGGTGGTGAAGGAAAACTCATTTTGTTTCAGGGTGGTGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACAATATATAAGGCAAAGCTTGCCGATGGAGGTACCATTGCCCTGAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATTAAACAGTTGGGAAAGATTCGCCATGAGAACTTGATTCCTTTGAGAGCTTTCTATCAGGGAAAGAGAGGAGAGAAACTCCTCATTTATGACTATCTGCCAATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTCGAAGGCACAAGATTGCATTAGGCATTGCCCGGGGACTCGCCCATCTTCACACAGGTCTTGAGGTTCCCATAACACATGGCAATGTGAGATCAAAAAACGTGCTTGTCGACGACTTCTTTGCAGCGAGACTGACCGAGTTCGGGCTCGACAAGCTAATGATCCCATCGGTAGCCGACGAAATCGTTTCGCTCGCAAAGTCGGACGGGTACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAATTCCAGAACAGACGTGTATGCATTTGGAATCTTGCTGCTGGAAATTCTGATTGGGAAGAAGCCAGGGAAGGGTGGAAGAAGTGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTGGCAGTTTTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTTTTGAAAGGGATCAGAAGTCCCATGGAAGATGGAGTGGTTCAGGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCAGTGAGACCCTCCATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGTCCAACAGAAACAAGAAGTGAAATTGGTACTCCATTTTGA 2046 45.06 MAILKLLPLCISFFLLIRAPVRGDSLHLPSSSSSSFSSDVQLLLGKIRASLEGDSQNLLLSSWNYSLPLCQWRGLKWVFSSGTPLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKEIGEFTMLQSLYLSINSLSGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCDKLVSVRLHGNSLSGSLPEPALPDSTCKNLQALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFGNSKFGVEAFEGNSPGLCGEPLKSCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSRSESEDEIEEGEDEENGGTIGTGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKGGRSGEFVDLPSMVKVAVLEETTMEVFDVEVLKGIRSPMEDGVVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 39804378 39806985 - Lag0002142.1 Lac4g2022 605554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac4g2022 681 MobiDBLite consensus disorder prediction 661 681 - -
Lac4g2022 681 MobiDBLite consensus disorder prediction 336 359 - -
Lac4g2022 681 Gene3D Transferase(Phosphotransferase) domain 1 459 674 - -
Lac4g2022 681 MobiDBLite consensus disorder prediction 662 681 - -
Lac4g2022 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 110 663 IPR052451 -
Lac4g2022 681 FunFam Leucine-rich repeat receptor-like protein kinase 205 297 - -
Lac4g2022 681 Pfam Protein tyrosine and serine/threonine kinase 385 656 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac4g2022 681 SUPERFAMILY Protein kinase-like (PK-like) 386 657 IPR011009 -
Lac4g2022 681 ProSiteProfiles Protein kinase domain profile. 381 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac4g2022 681 Gene3D Ribonuclease Inhibitor 200 299 IPR032675 -
Lac4g2022 681 SUPERFAMILY L domain-like 53 271 - -
Lac4g2022 681 Pfam Leucine Rich Repeat 132 151 IPR001611 GO:0005515(InterPro)
Lac4g2022 681 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515(InterPro)
Lac4g2022 681 Gene3D Ribonuclease Inhibitor 38 199 IPR032675 -
Lac4g2022 681 Gene3D Phosphorylase Kinase; domain 1 366 457 - -
Lac4g2022 681 Pfam Leucine rich repeat 207 265 IPR001611 GO:0005515(InterPro)
Lac4g2022 681 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 100 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2022 Lac-Chr4:39804378 Lac5g2771 Lac-Chr5:46111174 3.50E-57 dispersed
Lac4g2022 Lac-Chr4:39804378 Lac3g0862 Lac-Chr3:6916549 4.60E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86139 PF07714 PK_Tyr_Ser-Thr 2.50E-25 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac4g2022 - - - 0.0